Part of scaffold_455 (Scaffold)

For more information consult the page for scaffold_455 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PIT1 ENSTTRG00000001645 (Bottlenosed dolphin)

Gene Details

POU class 1 homeobox 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001550, Bottlenosed dolphin)

Protein Percentage 99.62%
cDNA percentage 99.11%
Ka/Ks Ratio 0.07987 (Ka = 0.0017, Ks = 0.0213)

PIT-1 ENSBTAG00000009128 (Cow)

Gene Details

pituitary-specific positive transcription factor 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000012033, Cow)

Protein Percentage 96.18%
cDNA percentage 94.91%
Ka/Ks Ratio 0.11999 (Ka = 0.018, Ks = 0.1497)

POU1F1  (Minke Whale)

Gene Details

POU class 1 homeobox 1

External Links

Gene match (Identifier: BACU000067, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 98.6%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.029)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 789 bp    Location:263090..247530   Strand:-
>bmy_09452
ATGAGTTGCCAACCTTTTACTTCGGCTGATACCTTTATACCTCTGAATTCTGAGTCTTCTGCAACTCTGCCTCTGATAATGCATCACAGCGCTGCCGAGTGCCTACCTGTCTCCAACCACGCCACCAACGTGATGTCCACAGTCCCGTCTATTTTGTCTTTGATCCAAACTCCTAAATGTTTGTGCACATATTTCTTGGTGACAACATTGGGAACCACAGCAACAGGACTTCATTATTCTGTTCCTTCCTGTCATTATGGAAACCAGTCATCGACCTATGGAGTGATGGCAGGGAGCTTAGCCCCTTGTCTTTATAAGTTTCCCGACCACACCTTGAGTCATGGCTTTCCTCCCATGCACCAGCCTCTCCTGGCAGAGGACCTCACAGCCGCTGATTTCAAGCAGGAGCTCAGGCGGAAAAGCAAGTTGGCTGAAGAGCCAATAGACATGGATTCTCCAGAAATCCGAGAACTTGAAAAGTTTGCCAATGAATTTAAAGTGAGAAGAATTAAGCTAGCTTTATACAATGAGAAAGTGGGTGCAAATGAAAGAAAAAGGAAACGGMGGACAACTATCAGTATTGCTGCTAAAGACGCTCTGGAGAGACACTTTGGAGAACAGAATAAACCTTCCTCTCAAGAGATCTTGCGGATGGCTGAAGAACTGAACCTGGAGAAAGAAGTAGTGAGGGTTTGGTTTTGCAACCGAAGGCAAAGAGAAAAACGGGTGAAAACAAGTCTGAATCAGAGTTTATTTACTATTTCTAAGGAGCATCTTGAATGCAGATAA

Related Sequences

bmy_09452T0 Protein

Length: 263 aa      View alignments
>bmy_09452T0
MSCQPFTSADTFIPLNSESSATLPLIMHHSAAECLPVSNHATNVMSTVPSILSLIQTPKCLCTYFLVTTLGTTATGLHYSVPSCHYGNQSSTYGVMAGSLAPCLYKFPDHTLSHGFPPMHQPLLAEDLTAADFKQELRRKSKLAEEPIDMDSPEIRELEKFANEFKVRRIKLALYNEKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQEILRMAEELNLEKEVVRVWFCNRRQREKRVKTSLNQSLFTISKEHLECR*