Part of scaffold_473 (Scaffold)

For more information consult the page for scaffold_473 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP16 ENSTTRG00000006702 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 16

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006348, Bottlenosed dolphin)

Protein Percentage 96.77%
cDNA percentage 97.14%
Ka/Ks Ratio 0.33857 (Ka = 0.0213, Ks = 0.063)

BT.51616 ENSBTAG00000020122 (Cow)

Gene Details

ubiquitin carboxyl-terminal hydrolase 16

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000026801, Cow)

Protein Percentage 91.95%
cDNA percentage 92.48%
Ka/Ks Ratio 0.18564 (Ka = 0.0434, Ks = 0.2336)

USP16  (Minke Whale)

Gene Details

ubiquitin specific peptidase 16

External Links

Gene match (Identifier: BACU005041, Minke Whale)

Protein Percentage 96.05%
cDNA percentage 96.75%
Ka/Ks Ratio 0.60824 (Ka = 0.0301, Ks = 0.0495)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2427 bp    Location:1138555..1102065   Strand:-
>bmy_09515
ATGGGAAAGAAACGGACAAAGGGAAAAACTGTTCCAATTGATGATTCTTCTGAATCTTTAGAACCTATGTGCAGACACATTAGAAGAGGATTGGAACAAGGTAATTTGAAAAAGGCTTTAGTGAATGTGGAATGGAACATTTGCCAAGATTGTAAGACAGACAATAAAGTAAAAGATAAATCTGAAGAAGAAACAGAAGAAAATCCTTCAGTTTGGCTGTGTCTTAAATGTGGCCATCAGGGCTGCGGCAGAAATTCTCAGGAGCAGCATGCCTTGAAGCACTATATGACGCCGAGATCCGAACCTCATTGTCTGGTTCTTAGTTTGGACAACTGGAGTGTATGGTGTTACCTATGTGATGATGAGGTCCAGTACTGTAATTCAAACCGATTGGGTCAGGTGGTTGATTATGTTAGAAAACAAGCCGGTATCACAGCTCCAAAATCAGCAGCAAAAGATAGTGGTAATATTGAACTTGAAAATAAAAAACTAGAAAAGGAGAGTAAAAATGAGCAAGAGAGAGAAAAAAAGGAAAACGTGGCTAAAGAAAATCCTTCCATGAATTCTACTTCCCAAATAACTAATTTGTCACAAACACCCGTGCTTAGAGAACTACTAAAAGAAGTAAAAATGTCTGGAACAATTGTAAAAATTGAACCACCTGATTTGGCATTAACAGAACCCTTAGAAATAAACCTTGAGCCTCCAGGCCCTCTTACTTTAGCCATGAGCCAGTTTCTTAATGAGATGCAAGAGACCAAAAAGGGAATCGTGACACCTAGAGAACTCTTTTCTCAGGTCTGTAAAAAAGCAGTGCGATTTAAAGGCTATCAGCAGCAAGACAGCCAGGAGCTGCTTCGCTATTTATTGGATGGAATGAGAGCAGAAGAACATCAAAGAGTGAGTAAAGGAATTCTTAAAGCATTTGGTAATTCTACTGAAAAATTGGATGAAGAACTAAAAAATAAAGTTAAAGATTATGAAAAGAAAAAATCAGTACCAAGTTTTGTGGACCGAGTATTTGGTGGTGAACTAACTAGTACAATCATGTGTGATGAGTGCAGAACTGTCTCCTTGGTTCATGAATCGTTCCTTGATTTGTCTCTACCGGTTTTAGATGATCAGAGTGGTAAGAAAAGTATAAATGATAAAAATCTGAAAAAGACCATGGATGATGAAGATAAAGAAAGTGAGGAAGAAAAAGATAATGACAGTTATATAAAGGAGAGAAATGATATTCCTTCAGGAACAAGTAAGCACTTACAGAAAAAAGCAAAGAAGCAAGCCAAAAAGCAAGCCAAGAACCAACGAAGGCAACAAAAAATTCAAGGAAAAGTTCTTCATTTAAATGATGTCTGTGCCATTGACCATCCTGAAGATAATGAATGTGAAGTTGAAATGTCACTTCAGCGAGAAGTGGATATTAAATCCAACCATATTTCACAAGAGGAAGTTATACATAAAGAATATTGTGTTAATCAGAAAGATTTGAATGGCCATGAAAAAATGACAGAAAGTATAACTGACAATCAAAAATCCACAGAGGAAGTAGATATGAAAAATGTCAACATGGATAATGATCTGAAGGTTTTGGCCTCTCCTGCTGAATGTACTAGGAACTTAAATGGTGCCTACATGAAGGAAGGGAGCAGTGGAGAAGTGGACATTTCCAGTGGATTTAAGAACCTTAACTTGAATGCTGCTCTTCAACCTGACGAAATAAATTTAGAGATTCTGAATGACGCTCATACTCCCGGGACGAAGGTATATGAGGTTGTAAACGAAGATCCAGAAACTGCTTTCTGTACTCTTGCAAACAGGGAAGCTTTCAGTACTGATGAATGTTCAATCCAACATTGTCTATATCAGTTCACCCGAAATGAGAAACTTCGAGATGCTAATAAACTGCTTTGTGAAGTGTGCACACGGAGACAGTATAGTGGACCAAAGGCAAATATAAAAGGTGAAAAGCAGCATGTTTACACCAATGCTAAGAAGCAGATGCTCATTTCCCTTGCTCCTCCTGTTCTCACTCTTCACTTAAAGAGATTTCAGCAGGCTGGTTTTAACCTACGCAAAGTTAACAGACACATAAAATTTCCAGAAATCTTAGATTTGGCTCCTTTTTGTACCCTTAAATGTAAGAATGTTGCTGAAGAAAATACAAGGGTACTATATTCCTTATATGGAGTCGTTGAACACAGTGGTACCATGAGGTCGGGGCATTACACTGCCTATGCCAAGGCAAGATCTGCAAACAGTCATCTCTCTAATCTTGTTCTCCACGGTGATATTCTACAGGATTTTGAAATGGAATCAACCAAAGGACAGTGGTTTCACATCAGCGACACACATGTGCAAGCTGTGCCTACAACTAAAATAACATTAATGCATTTTCTAAACTTACCAGAATCTTACAAACTCTGA

Related Sequences

bmy_09515T0 Protein

Length: 809 aa      View alignments
>bmy_09515T0
MGKKRTKGKTVPIDDSSESLEPMCRHIRRGLEQGNLKKALVNVEWNICQDCKTDNKVKDKSEEETEENPSVWLCLKCGHQGCGRNSQEQHALKHYMTPRSEPHCLVLSLDNWSVWCYLCDDEVQYCNSNRLGQVVDYVRKQAGITAPKSAAKDSGNIELENKKLEKESKNEQEREKKENVAKENPSMNSTSQITNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGIVTPRELFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSVPSFVDRVFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDKNLKKTMDDEDKESEEEKDNDSYIKERNDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDVCAIDHPEDNECEVEMSLQREVDIKSNHISQEEVIHKEYCVNQKDLNGHEKMTESITDNQKSTEEVDMKNVNMDNDLKVLASPAECTRNLNGAYMKEGSSGEVDISSGFKNLNLNAALQPDEINLEILNDAHTPGTKVYEVVNEDPETAFCTLANREAFSTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQYSGPKANIKGEKQHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNRHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARSANSHLSNLVLHGDILQDFEMESTKGQWFHISDTHVQAVPTTKITLMHFLNLPESYKL*