Sequence details bmy_09554 (Coding sequence)

Part of scaffold_467 (Scaffold)

For more information consult the page for scaffold_467 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LIMCH1 ENSTTRG00000003814 (Bottlenosed dolphin)

Gene Details

LIM and calponin homology domains 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003607, Bottlenosed dolphin)

Protein Percentage 86.24%
cDNA percentage 89.57%
Ka/Ks Ratio 0.58736 (Ka = 0.0814, Ks = 0.1386)

LIMCH1 ENSBTAG00000010677 (Cow)

Gene Details

LIM and calponin homology domains-containing protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000039445, Cow)

Protein Percentage 33.72%
cDNA percentage 46.05%
Ka/Ks Ratio 0.49697 (Ka = 0.8995, Ks = 1.81)

Additional orthologs identified in other species via the OPTIC pipeline.

LIMCH1 (Human)   Limch1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3372 bp    Location:1089724..1034280   Strand:-
Raw sequence 
>bmy_09554
ATGGGAGGGAAAATAGTAAAACTCCAAGGAGAATTGGATAATTTTAAAACATGCAAAGTAATTGCAGGAGAGACTGTGAAGGGTATGGATGACTTCAGACTCTTACCAGCTCATTGTCAGTCTACAAGAGGTGTTGTGAAGGACACAGATATTGTGAATGATGATGAAGACCAGAACCCTCCTCAGCTGTCGATTGTGTCTGCTACTCTGCCAGGTCAAAGTAAACTTGACAATATCATATTATTCTTGAGAGGTTGTAAAGAGCTCGGCCTTAAAGAATCTCAACTTTTTGACCCGAGTGACCTACAGGATACGTCCAACAGAGTACTAGTGACCATTTACTGGCTGGGCAAAGCAGCAAATAGCTGTGCATCTTACAGTGGGACAACGCTAAACCTGAAGGAGTTTGAAGGCTTGCTGGCTCAGATGAGAAAGGAGACTGATGACGTTGARAGCCCTAAACGTAGTATTCGAGACAGTGGCTACATCGACTGCTGGGATTCTGAGCGCAGCGACTCCCTCTCTCCCCCTCGACACGGCAGAGATGATTCCTTCGATAGCCTGGATTCCTTCGGCTCCCGTTCCCGGCAGACACCTTCGCCAGATGTAGTCCTCAGGGGAAGCAGTGATGGGAGGGGAAGCGACTCTGAATCCGACTTGCCCCATCGGAAGCTGCCGGATGTGAAGAAGGATGACATGTCTGCGAGGCGGACTTCCCACGGTGAGCCAAAATCAGCAGTGCCTTTTAACCAGTACCTCCCCAACAAAAGCAACCAGACGGCCTACGTCCCCGCGCCTCTGAGAAAGAAGAAAGCAGAGCGAGAGGAATATCGGAAGAGCTGGAGTACTGCCACCTCCCCCCTGGGTGGGGAGAGGCCCTTCAGCTATCCTGAAACAATAGAGGAAGAGGGCAGTGAAGTGGGGTCTCCTTGTGAAGAGGACCCCGTCAGCCGAATGGACCCTGGTGGGAAGCCTCCTGGTGGTGGGTTAGAATTACCAACCGGCAGTGGGAAGGAGCAGCCTTCTCCAGAGGGGGCTGCGGTGGCACCAGCTCCCAAGTCTGAAGAGGAAGATGCTGCTGAAATCCGAAAGCGCAGAAGGCTAGAGCAAGCTGGAATCAAGGTCATGCCAGCAGCACAGCGCTTTGCCAGGAGAGCAAGAATGAACCAGAACAAGCCAATGGTGCCACTGAATCAACTCCTCTATGGGCCTTACCGAAAAAAAGAGGCAGAGAAATCAGATGGCAGCAAGCAACCCTCAAAGGGAATCTCAGAAAAGAAAAGTCTAGAACATAAAAGAAACCAAGGCCAAACGGAAGAGGTGAAGTCGAGGGTGACCTGTATTGTGCGGGCTCTGCAGAGTGGACCTGCGGAAGAGGGGCTCAGGCAGGTGCCGGATCTTCACAAGGATGACCTGGCGCAGCGCAGAATTCAGGGCAGGTTTGGCCCTCACCGCGAGGCTCCGAGCTTTGTCACGGTCGCCAATATAACAGAAGCCGACCGGGAGACGTGGGAGAGGCTGAAAGTGTCAGGAAAGACGAGGGATGGAGATGTGGAGCACACGTGTGCCCCTGAGCCTTCACCAGAAATTAAAGCAGAAACTGCCATCCGTGATGACTTTGCCAGCCGCAAGGCAAGGGCTTATAAGAAAGCTTCCAGCCCTAGGCAAAAGTTCGTGCACTTCGGACCAGTGACAGAGATAGATCAGCAGACATGGAAGCGGCTCAGCATTGGCAGGGCTGGGCCGAAGGAGGATGCAGAGGAAGTCATCAGTCACAGCCGCAAGATTCAGACGTACTCTGTGCCCCCTGCCTTGGCGGCCATGTCCATTACCTGCAAACAGCTGCCACAGGATGGCAAAGAAGCGACTGAAGGAGTCGTTCAAAGAGGTTCTGAGACGGTGCCAAAGGCTGAAAGATCCGAGGAGAGCGGCCAGCCACTTTCATGTCCTCTGACCTCTGAATGGGAGGCTTCAGAGAGAGAAGAGAAGTCAGAGAAGATGACAGCTCCTGCCTGGAGTGGCAGTGGACTGAAAGGCCAAAGAAAATTGTATGATTCACAAAAAGATGACGTGATGGCCAGGAGAACTGGGATGTCTCTTAGACACATTGAATCCAAGCTAAAACAGTTCCGTCCAGTTCCATTTGCAAAGCAACGCATTGTGGAGGAATCTGCCAAGGGTCCACCAATAAAAGATAAGAGATACGGACCGAGAACTCCTGTGTCTGATGACGCAGAGAGCACGAGTATGTTTGACATGCGGTGTGAGGAGGAGGCCAAGGTGCAGCCGCACAGCAGGGCCCGCCAGGAGCAGCTGCAGCTGATAAACAACCAGCTGCGGGAAGAGGATGACAAATGGCAAGATGACCTGGCTCGTTGGAAGAGCCGTAGAAGAAGTGCTTCTCAGGACTTAATCAAGAAAGAGGAAGAAAGGAAAAAAATGGAGAAGTTACTGGCTGGAGAGGATGGGACAAGTGAACGAAGGAAAAGCATCAAAACCTACAGAGAAATTGTCCAAGAAAAGGAGAGGAGAGAGAGGGAGTTGCATGAGGCATACAAGAATGCACGGTCCCAGGAGGAGGCGGAAGGGATCCTTCAACAGTACATCGAGAGGTTCACCATCAGCGAAGCTGTTCTTGAACGCTTGGAGATGCCAAAAATTCTGGAAAGAAGCCATTCAACAGAGCCAAACTTATCCTCCTTCCTGAATGACCCCAACCCCATGAAATACCTGCGGCAACAGTCACTGTCTCCACCCAAATTCACTGCCACTGTGGAAACCACCATCGCTCGTACCAGTGTACTGGATGCCAGCATGTCAGCAGGCAGTGGGTCTCCAAGCAAAACTGTCACTCCCAAAGCAGTGCCTATGCTGACACCCAAGCCTTACTCCCAGCCCAAAAACTCTCAAGAGGTCCTGAAGACCTTCAAGGTAGATGGGAAAGTCACCATGAATGGAGAGACGGTTCACGTTGACGAGGAGGAGAAGGAAAGAGAGTGTCCCACGGTGACACTTGCCCCCTCGTTGACCAAATCCCAGATGTTTGAAGGTGTGGCCAGATTGCATGRGTCCCCCATGGAGCTGAAACAAGACAACAGTAGCATTGAGATCAACATAAAGAAGCCAAGTTCTCTTCCCCAAGAGCTGACGGGTAATTCAAGAATAGCAGAAGAGAGAACTCAAAATAACATTAGATTTGCTTATTTGGAGTATAAAACGTCATCAAGAAGATTACACTTTTTCTTAGATCTCTCACCAGGGTTCGTGCTGGTTTTGCTGATCAAACCCCAGCTGTCAGTACCACAGATACAGGCCGCCTTTTGGGGTAGAATCGGACTCTGTTCAGCCTTATCTGTTCTCACCAGAGGCTGA

Related Sequences

bmy_09554T0 Protein

Length: 1124 aa      View alignments
>bmy_09554T0
MGGKIVKLQGELDNFKTCKVIAGETVKGMDDFRLLPAHCQSTRGVVKDTDIVNDDEDQNPPQLSIVSATLPGQSKLDNIILFLRGCKELGLKESQLFDPSDLQDTSNRVLVTIYWLGKAANSCASYSGTTLNLKEFEGLLAQMRKETDDVESPKRSIRDSGYIDCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSRQTPSPDVVLRGSSDGRGSDSESDLPHRKLPDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTATSPLGGERPFSYPETIEEEGSEVGSPCEEDPVSRMDPGGKPPGGGLELPTGSGKEQPSPEGAAVAPAPKSEEEDAAEIRKRRRLEQAGIKVMPAAQRFARRARMNQNKPMVPLNQLLYGPYRKKEAEKSDGSKQPSKGISEKKSLEHKRNQGQTEEVKSRVTCIVRALQSGPAEEGLRQVPDLHKDDLAQRRIQGRFGPHREAPSFVTVANITEADRETWERLKVSGKTRDGDVEHTCAPEPSPEIKAETAIRDDFASRKARAYKKASSPRQKFVHFGPVTEIDQQTWKRLSIGRAGPKEDAEEVISHSRKIQTYSVPPALAAMSITCKQLPQDGKEATEGVVQRGSETVPKAERSEESGQPLSCPLTSEWEASEREEKSEKMTAPAWSGSGLKGQRKLYDSQKDDVMARRTGMSLRHIESKLKQFRPVPFAKQRIVEESAKGPPIKDKRYGPRTPVSDDAESTSMFDMRCEEEAKVQPHSRARQEQLQLINNQLREEDDKWQDDLARWKSRRRSASQDLIKKEEERKKMEKLLAGEDGTSERRKSIKTYREIVQEKERRERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNLSSFLNDPNPMKYLRQQSLSPPKFTATVETTIARTSVLDASMSAGSGSPSKTVTPKAVPMLTPKPYSQPKNSQEVLKTFKVDGKVTMNGETVHVDEEEKERECPTVTLAPSLTKSQMFEGVARLHXSPMELKQDNSSIEINIKKPSSLPQELTGNSRIAEERTQNNIRFAYLEYKTSSRRLHFFLDLSPGFVLVLLIKPQLSVPQIQAAFWGRIGLCSALSVLTRG*