Part of scaffold_465 (Scaffold)

For more information consult the page for scaffold_465 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDX1 ENSTTRG00000002811 (Bottlenosed dolphin)

Gene Details

pancreatic and duodenal homeobox 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002634, Bottlenosed dolphin)

Protein Percentage 98.94%
cDNA percentage 98.23%
Ka/Ks Ratio 0.05659 (Ka = 0.0044, Ks = 0.0784)

BT.87929 ENSBTAG00000010690 (Cow)

Gene Details

pancreas/duodenum homeobox protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014141, Cow)

Protein Percentage 94.04%
cDNA percentage 93.22%
Ka/Ks Ratio 0.09044 (Ka = 0.0273, Ks = 0.3022)

PDX1  (Minke Whale)

Gene Details

pancreatic and duodenal homeobox 1

External Links

Gene match (Identifier: BACU000124, Minke Whale)

Protein Percentage 87.74%
cDNA percentage 89.94%
Ka/Ks Ratio 0.30161 (Ka = 0.0804, Ks = 0.2666)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 867 bp    Location:862842..858428   Strand:-
>bmy_09568
ATGAATGGCGAGGAGCATTACTACGCGGCCACGCAGCTGTACAAGGACCCCTGCGCGTTCCAGCGGGGCCCGGCGCCAGAGTTCAGCGCCAGCCCCCCTGCGTGCCTGTACATGGGCCGCCAGCCCCCGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCTCCATTCCCCGGCGCCCTGGGCGCGCTGGAGCAGGGCAGCCCCCCGGACATCTCCCCGTACGAGGTGCCCCCGCTCGCCGACGACCCCGCGGTGGCGCACCTCCACCACCACCTCCCGGCTCAGCTCGCGCTCCCCCGCCCGCCGGCCGGGCCCTTCCCGGATGGAGCTGAGCCGGGCGTCCTGGAGGAGCCCTGCCGCGTCCAGCTGCCTTTCCCGTGGATGAAGTCTACCAAGGCTCACGCGTGGAAAGGCCAGTGGGCAGGCGGTGCCTACGCAGCGGAACCGGAGGAGAACAAGCGGACGCGCACCGCTTACACTCGCGCGCAGCTGCTGGAGCTGGAGAAGGAGTTCCTGTTCAACAAATACATCTCCAGGCCGCGCCGGGTGGAGCTGGCCGTCATGCTGAACTTGACCGAGAGACACATCAAGATCTGGTTCCAAAACCGCCGGATGAAGTGGAAAAAGGAGGAGGACAAGAAGCGCAGCGGCGGCACCGTGGCCGCGGGCGGCAGGGACGCGGAGCCCGAGCAGGACTGCGCGGTGACCTCGGGCGAGGAGCTGCTGGCGCTGCCGCCCCCGCCGCCCCCCGGGGGTGCTGTGCCGCCCGCGGTCCCCGCCGCCGCCCGAGAGGGCCGCCTGCCGCCTGGCCTTAGCGCGTCGCCTCAGCCTTCCAGTGTGGCGCCTCTGCGACCGCAAGAATCTCGGTGA

Related Sequences

bmy_09568T0 Protein

Length: 289 aa      View alignments
>bmy_09568T0
MNGEEHYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPLPPPPPPPPPFPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPRPPAGPFPDGAEPGVLEEPCRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKRSGGTVAAGGRDAEPEQDCAVTSGEELLALPPPPPPGGAVPPAVPAAAREGRLPPGLSASPQPSSVAPLRPQESR*