Part of scaffold_485 (Scaffold)

For more information consult the page for scaffold_485 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RCL1 ENSTTRG00000016525 (Bottlenosed dolphin)

Gene Details

RNA terminal phosphate cyclase-like 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015666, Bottlenosed dolphin)

Protein Percentage 89.47%
cDNA percentage 90.27%
Ka/Ks Ratio 0.52749 (Ka = 0.088, Ks = 0.1668)

RCL1 ENSBTAG00000018667 (Cow)

Gene Details

RNA 3'-terminal phosphate cyclase-like protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024840, Cow)

Protein Percentage 85.65%
cDNA percentage 86.12%
Ka/Ks Ratio 0.31723 (Ka = 0.1037, Ks = 0.3268)

RCL1  (Minke Whale)

Gene Details

RNA terminal phosphate cyclase-like 1

External Links

Gene match (Identifier: BACU020458, Minke Whale)

Protein Percentage 89.95%
cDNA percentage 91.07%
Ka/Ks Ratio 0.65424 (Ka = 0.0861, Ks = 0.1317)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 630 bp    Location:653694..676266   Strand:+
>bmy_09767
ATGACAGTTCCACAAATATTTGCTAGCTTTATGACTGACTTTTCTCTGTTGTGGAGTCCAAGCAGAATGACACCCTTAACTCCAGGTTGCAGGTATTCGGTACGCGTATCACCTCAGATGGCAAACCGGATTGTGGATTCTGCAAGGAGCATCCTCAACAAGTTTATACCCGATATCTATATTTACACAGACCACATGAAAGGAGTCAACTCTGGGAGGTCTCCGGGCTTTGGACTGTGGCTGGTTGCTGAGACCACCAACGGCACCTTCCTCAGCGCTGAACTGGTCTCCAACCGCCAGGGCCAGGGGGCAGCGGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCCAAGCTGCTGCTCGAAGAAATCCATAGGGGTGGATGTGTGGACTCGACCAACCAAAGCCTGGCTCTGTTACTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTTCTCGGACCACTCTCTCCCTACACGATAGAATTTTTGCGGCATTTGAAGAGCTTTTTCCAGATTATGTTTAAAATTGAAACCAAGCCATGTGGTGAAGAACTCAAGGGAGGGGATAAAGTGCTGATGACTTGTGTTGGCATTGGCTTCTCCAACCTCAGCAAGACCCTCAAGTGA

Related Sequences

bmy_09767T0 Protein

Length: 210 aa      View alignments
>bmy_09767T0
MTVPQIFASFMTDFSLLWSPSRMTPLTPGCRYSVRVSPQMANRIVDSARSILNKFIPDIYIYTDHMKGVNSGRSPGFGLWLVAETTNGTFLSAELVSNRQGQGAAVLPEDLGRNCAKLLLEEIHRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQIMFKIETKPCGEELKGGDKVLMTCVGIGFSNLSKTLK*