Part of scaffold_500 (Scaffold)

For more information consult the page for scaffold_500 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SCAF11 ENSTTRG00000004672 (Bottlenosed dolphin)

Gene Details

SR-related CTD-associated factor 11

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004412, Bottlenosed dolphin)

Protein Percentage 93.14%
cDNA percentage 94.12%
Ka/Ks Ratio 0.31008 (Ka = 0.0143, Ks = 0.0461)

SCAF11 ENSBTAG00000001810 (Cow)

Gene Details

protein SCAF11

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002366, Cow)

Protein Percentage 89.94%
cDNA percentage 92.92%
Ka/Ks Ratio 0.28815 (Ka = 0.0491, Ks = 0.1705)

SCAF11  (Minke Whale)

Gene Details

SR-related CTD-associated factor 11

External Links

Gene match (Identifier: BACU007951, Minke Whale)

Protein Percentage 98.85%
cDNA percentage 99.15%
Ka/Ks Ratio 0.22327 (Ka = 0.0042, Ks = 0.0187)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3774 bp    Location:265257..253698   Strand:-
>bmy_09835
CCTCAAAGATCAAATCCGTGTACAAATCAGTGCTTCAGAAATTTTTTCTCCAGTATCTTCTCTTCTAGTAGTCACACTGGAGAATCTTCTTTTACCTGTACAGCTTACCGTACAGAATTTATAGAAGTCAATGAAATCAGTGCATTGATTAGGCAGAAGAGACAGGAACTGGAATTGTCGTGGTTTCCTGATACATTACCTGGAATTGGAAGAATTAGTTTTATACCCTGGAATATTGAAACAGAAGTCCTTCCTCTCATCTCCTCTGTGTTGCCAAGAACTATTTTTCCAACAAGTACCATATCTTTAGAAAATTTTGGTACTTCTTGCAAAGGATATGCATTAGCACATACTCAAGAAGGAGAAGAGAAGAAGCAAACTTCTGGTACCTCAAGCACCAGAGGATCAAGACGAAAACCAGCAGCAACAACTCCTACAAGGAGATCTACACGTAACACGAGAGCTGAACCAGTCACTCAGTCTCAGAGGTCCCCAGTATCAAATAATTCTGGSTGTGATGCCCCAGATAGTGAGTCAGAAAAGCAAACAAGGCAGGCTCCAAAACGGAAGTCTGTAAGAAGAGGAAGAAAACTACCTTTACTGAAAAAGAAACTTCGGAGCTCTGTACCTCCCCCTGAAAAATCATCTTCCAGTGATTCAGTAGATGAAGAAATAGTAGAATCTGACATACCACCTGTGTTAGAGAAAGAACATCARTCAGATGTAGAAAGTAGTAACACTGTGCAGATAAATGTAGAAAATGAGTCTGCTAATGGCTTGAGAAGTTGCAGTGAGCCAGTACAAGAAAGTGAGGAACATAGTGAGACCCATGATACAGAGGAAAGAGTAGAATCTTTATATTCTGAGTCTGGTACCCAAGATCCTCCTGTACTAGTTGGAGAGGAGGAGGAAATTCAAAAAGTTGAGAATAYGGGTATAGAGGCTAATATTTTATGTCTGGAAAGTGAGATTTCTAAGAATACTTCTGATAAAGGAGGTGACCCATTGGAAAATCAAGACCAAATAGCTTTACCTTCAGAATCAGAAGTAAAAGCAGATGGATGTACAGATCATCTTCCAAATGATTTTCTTACATGTTCAGGATCTGAAATTGAAGTACACCAACCTATATCAAGCCTAGGTGAGATCCCTGAGAACGCAGAGTCAGCGGTTAATGAAGAAAAAGTTATGGAGAGTCCTATAGTAAAAATTATTGATCATAAAGATTCTACAGTAAAAACAGAACATCTTATTGACAGCCCCAAATTAGAATCTTCTGAGGGTGGAATTATACAAACGGTGGACAAAAAATCTATTGAGAGCTCAGAGGTTCATTTGCTTGGGCATGTTGAAAATGAAGATGCAGAAATAATTGCAACATGTGATACTTCAGGGAATGAAAATTTCAATAGTATTCAAGACTCTGAAAACAATTTATTAAAAAAAAATCTTAACACCAAATTGGACAAATCTTTCGAAGAAAAGACTGAMTCTCTGGTTGAACATCCCAGATCTACAGAATTGCCTAAAACACATGTTGCACTGATTCAGAAGCATTTTAGTGAGGACAATAATGAAATGATACCTATGGAATGTGATTCATTTTGCAGTGACCAGAATGAATCTGAACTCGAACCATCTGTAAATGCTGATGCTAAACAATTGAATGAAAATTCTGTGGAGCACAGTTCCCAAAAGAATATGTCATCTTCTGGTCCTTCAAATGAAAAGGTTGAAACTGTATCTCAACCATCTGAAATCCCAATAGATACGATAGATAAAGCCAAAAAGCCTCGTACTCGAAGATCTAGATTTCATTCTCCATCTACAACTTGGTCTCCCAACAAAGACACTGTACGAGAAAAGAAGCGGTCTCAGTCTCCATCTCCCAAAAGAGAAACTGGAAAAGAAAGCAGGAAGTCTCGATCACCATCTCCCAAGAAAGAATCTGCAAGAGGACGGAGAAAATCTCGTTCTCAGTCCCCAAAAAAGGACCCACGAGAAAGGAGGAAATCTCAGTCTCGATCTCCAAAAAGAGATAGCACGAGGGAAGGCAAAAGATCTGAATCACTCTCCCCAAAAAGAGACACTTCTAGAGAGAACAGAAGATCTCAGTCAAGACTGAAAGATTCCTCCCCAAGAGAAAAATCCAGGTCCCGGAGCAGAGAAAGAGAAAGTGATAGAGATGGGCCAAAGAGAGATCGAGATAGAGAAAGGAGAACCAGAAGGTGGTCTCGGTCCAGATCTCGTTCTAGGTCACCATCAAGATCTAGAACAAAAAGTAAGAGTTCATCATTTGGTAGAAATGACAGAGTCAGTTATTCTCCTCGATGGAAGGAAAGATGGGCAAATGATGGTTGGAGATGTCCACGGGGAAATGATCGATACAGAAAGAATGACTCAGAGAAACAGAATGAAAATACAAGAAAAGAAAAAAATGACATCAGTCCAGATGCTGATGATTCAAATTCTGCTGACAAACATAGAAATGACTGTCCCAGTTGGGTAACAGAAAAAATAAATTCTGGGCCTGATCCGAGGACCAGAAATCCAGAAAAGTTAAAAGATTCTCATTGGGAAGAAAATAGAAATGAAAATTCAGGGAATTCTTGGAATAAAAACTTTGGTTCAGGTTGGATGTCTAACCGTGGTAGAGGTAACCGTGGCAGAGGTGCTTACAGAGGTGGTTTTGCCTACACAGATCAAAATGAAAACAGGTGGCAAAACCGAAAACCCCTCTCAGGGAATTCAAATAGTTCAGGGAATGAGACTTTCAAGTTTGTGGAACAGCAACCCTATAAACGGAAAAGTGAGCAAGAGTTCTCATTTGATACACCGGCAGATAGGTCGGGGTGGACATCTGCATCTAGTTGGGCTGTGAGAAAGACTCTGCCAGCAGATGTACAAAACTATTATTCACGACGAGGGAGGAATTCTTCAGGTCCACAGTCTGGATGGATGAGACAAGAGGAGGAAACAACTGAACAGGATTCTAACCTAAAAGACCAAACAAACCAACAAGGTGATGGTTCTCAGCTACCTATAAATATGATGCAACCACAAATGAATGTAATGCAGCAACAAATGAATGCACAACACCAGCCTATGAATATCTTCCCATATCCAGTGGGTGTTCATGCTCCTCTGATGAATCTCCAGCGCAGTCCATTTAACATTCATCCTCAGCTGCCCTTGCATCTGCACACAGGAGTGCCTCTCATGCAGGTAGCTGCTCCTACCAGTGTATCTCAGGGACTACCACCACCACCACCCCCTCCCCCTCCATCCCAGCAAGTCAGCTACATTGCTTCACAGCCAGATGGAAGGCAATTGCAGGGTATTCCTAGTGCTTCTCATGTAAGTAATAACATGAGTACACCAGTCTTGCCTGCTCCGACAGCAGCCCCAGGAAATATGGGAACAGTTCAGGGACCAAGTTCTGGTAATACTTCGTCATCAAGTCACAGCAGAGCTTCTAATGCTGCTGTAAAATTGGCAGAAAGCAAAAAATTGCAAATTCAAGAAAGAGCAGCACAGGAGGTAAAATTGGCCATTAAGCCATTTTATCAAAATAAAGATATCACCAAGGAAGAATATAAAGAGATTGTGCGGAAAGCGGTAGATAAAGTTTGTCATAGTAAGAGTGGAGAAGTAAATTCTACTAAAGTGGCAAATCTGGTTAAAGCCTATGTAGACAAATACAAATACTCACGGAAGGGAAGCCAAAAGAAAACTCTGGAAGAACCTGTATCTACTGATAAAAACATAGGCTGA

Related Sequences

bmy_09835T0 Protein

Length: 1258 aa      View alignments
>bmy_09835T0
PQRSNPCTNQCFRNFFSSIFSSSSHTGESSFTCTAYRTEFIEVNEISALIRQKRQELELSWFPDTLPGIGRISFIPWNIETEVLPLISSVLPRTIFPTSTISLENFGTSCKGYALAHTQEGEEKKQTSGTSSTRGSRRKPAATTPTRRSTRNTRAEPVTQSQRSPVSNNSGCDAPDSESEKQTRQAPKRKSVRRGRKLPLLKKKLRSSVPPPEKSSSSDSVDEEIVESDIPPVLEKEHQSDVESSNTVQINVENESANGLRSCSEPVQESEEHSETHDTEERVESLYSESGTQDPPVLVGEEEEIQKVENXGIEANILCLESEISKNTSDKGGDPLENQDQIALPSESEVKADGCTDHLPNDFLTCSGSEIEVHQPISSLGEIPENAESAVNEEKVMESPIVKIIDHKDSTVKTEHLIDSPKLESSEGGIIQTVDKKSIESSEVHLLGHVENEDAEIIATCDTSGNENFNSIQDSENNLLKKNLNTKLDKSFEEKTXSLVEHPRSTELPKTHVALIQKHFSEDNNEMIPMECDSFCSDQNESELEPSVNADAKQLNENSVEHSSQKNMSSSGPSNEKVETVSQPSEIPIDTIDKAKKPRTRRSRFHSPSTTWSPNKDTVREKKRSQSPSPKRETGKESRKSRSPSPKKESARGRRKSRSQSPKKDPRERRKSQSRSPKRDSTREGKRSESLSPKRDTSRENRRSQSRLKDSSPREKSRSRSRERESDRDGPKRDRDRERRTRRWSRSRSRSRSPSRSRTKSKSSSFGRNDRVSYSPRWKERWANDGWRCPRGNDRYRKNDSEKQNENTRKEKNDISPDADDSNSADKHRNDCPSWVTEKINSGPDPRTRNPEKLKDSHWEENRNENSGNSWNKNFGSGWMSNRGRGNRGRGAYRGGFAYTDQNENRWQNRKPLSGNSNSSGNETFKFVEQQPYKRKSEQEFSFDTPADRSGWTSASSWAVRKTLPADVQNYYSRRGRNSSGPQSGWMRQEEETTEQDSNLKDQTNQQGDGSQLPINMMQPQMNVMQQQMNAQHQPMNIFPYPVGVHAPLMNLQRSPFNIHPQLPLHLHTGVPLMQVAAPTSVSQGLPPPPPPPPPSQQVSYIASQPDGRQLQGIPSASHVSNNMSTPVLPAPTAAPGNMGTVQGPSSGNTSSSSHSRASNAAVKLAESKKLQIQERAAQEVKLAIKPFYQNKDITKEEYKEIVRKAVDKVCHSKSGEVNSTKVANLVKAYVDKYKYSRKGSQKKTLEEPVSTDKNIG*