Part of scaffold_502 (Scaffold)

For more information consult the page for scaffold_502 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRPF38A ENSTTRG00000016139 (Bottlenosed dolphin)

Gene Details

PRP38 pre-mRNA processing factor 38 (yeast) domain containing A

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015295, Bottlenosed dolphin)

Protein Percentage 94.21%
cDNA percentage 93.95%
Ka/Ks Ratio 0.45683 (Ka = 0.0506, Ks = 0.1108)

PRPF38A ENSBTAG00000002720 (Cow)

Gene Details

Pre-mRNA-splicing factor 38A

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003524, Cow)

Protein Percentage 94.21%
cDNA percentage 90.73%
Ka/Ks Ratio 0.18271 (Ka = 0.0505, Ks = 0.2766)

PRPF38A  (Minke Whale)

Gene Details

pre-mRNA processing factor 38A

External Links

Gene match (Identifier: BACU000267, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.59%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0114)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 780 bp    Location:583529..603771   Strand:+
>bmy_09989
ATGGCGAACCGTACTGTAAAAGATGCGCATAGCATCCACGGCACCAACCCTCAGTATCTGGTGGAGAAGATCATTCGGACGCGCATTTATGAGTCCAAATACTGGAAAGAGGAGTGCTTTGGCCTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGTTAAGATTTGTGGGTGGTGTCTATGGTGGCAACATAAAGCCAACTCCCTTTCTGTGTTTGACCTTGAAGATGCTTCAGATTCAACCCGAGAAGGATATCATTGTAGAGTTTATCAAAAATGAAGATTTCAAGTATGTCCGCATGTTGGGAGCACTTTACATGAGGTTGACGGGCACTGCAATTGATTGCTACAAGTACTTGGAGCCTCTATACAACGACTATAGAAAAATCAAGAGCCAGAACCGAAATGGAGAGTTTGAACTGATGCATGTGGATGAATTTATTGATGAACTACTGCACAGTGAGAGAGTCTGTGATATCATTCTGCCCCGGCTACAGAAACGCTATGTGCTAGAGGAAGCTGAGCAACTGGAGCCTCGGGTTAGCGCTCTAGAAGAGGACATGGATGACGTGGAGTCCAGCGAAGAGGAGGAAGAAGAGGATGAGAAGTTGGAAAGAGTGCCGTCACCTGATCACCGCCGGAGAAGCTACCGAGACTTGGACAAGCCCCGGCGCTCTCCCACACTACGCTATCGGAGGAGTAGGAGTCGGTCTCCCAGAAGGTTAAGGCCCTTCCAGGCCTTGGCCTCTTCCAGGGAGACATTAAGCACTGTAGCGTAG

Related Sequences

bmy_09989T0 Protein

Length: 260 aa      View alignments
>bmy_09989T0
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSRSPRRLRPFQALASSRETLSTVA*