Part of scaffold_509 (Scaffold)

For more information consult the page for scaffold_509 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HGD ENSTTRG00000016659 (Bottlenosed dolphin)

Gene Details

homogentisate 1,2-dioxygenase

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015794, Bottlenosed dolphin)

Protein Percentage 93.98%
cDNA percentage 94.65%
Ka/Ks Ratio 0.34201 (Ka = 0.0162, Ks = 0.0474)

HGD ENSBTAG00000015895 (Cow)

Gene Details

homogentisate 1,2-dioxygenase

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053295, Cow)

Protein Percentage 94.71%
cDNA percentage 94.12%
Ka/Ks Ratio 0.17704 (Ka = 0.028, Ks = 0.1584)

HGD  (Minke Whale)

Gene Details

homogentisate 1,2-dioxygenase

External Links

Gene match (Identifier: BACU009291, Minke Whale)

Protein Percentage 74.9%
cDNA percentage 79.05%
Ka/Ks Ratio 0.67272 (Ka = 0.2225, Ks = 0.3307)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1689 bp    Location:952579..997071   Strand:+
>bmy_10106
CACAACTCACGGAAGCGTCTGAGAATTCCAGAGCTTCAGAGTCAGAAAGAACTTAGAGAGGCCCTCGTCCAAGCTGTTGTGTTCAGAGGCTTCGCCGTGGTGTCCGCCCAGGAAAAGGAAGTGAGAACGCTCAGCGCTCAGACCTTCTTGCCTCCCTTTGCAGAGAGAAACAATGCTGCAGTTGAACAAAGTGAAGCCACTGTGATACTCAGTGGCTTCAGGCAAGATTGGTCTGCAATTCCATTCCACAGAACTGAAGATAATTTCGGGTCATTACCATTTCTCAGCAGCTCAGATTCAATCTTCTTGATGTACATTTCTGGATTCGGTAATGAGTGTGCCTCAGAGGATCCTCGCTGCCCAGGTGCCCTGCCAGAAGGACAGAATAATCCTCAAGTTTGCCCTTACAATCTGTATGCTGAGCAGCTCTCAGGATCAGCTTTCACTTGTCCACGGAGCAGCAATAAAAGAAGCTGGCTATATAGGATTCTACCTTCGGTTTCTCACAAGCCTTTTGAATCCATTGACCAAGGCCATGTCACTCACAACTGGGATGAAGTTGATCCTGATCCTAACCAGGTAACCTGGTCCTGTGAATTGGAGAATAGCATGTCTCCATCTGCCAAACTGGCAGAAAACAACTTCGTCTCAGTCTTCCCTGAGAATCTCTGGTTTGCAAACCTTAGACTTGTATTATTTAAACATCCTTGCTATTTGCTGAGATGGAAACCATTTGAGATTCCAAAAGCCTCTCAGAAGAAAGTGGACTTCGTGAGTGGACCAGCGGGAGGGCTGGCCTCATTCACCTTTCCCTCTCGTGCGGGTCTCTCCCAGGGCCTGCACACCTTGTGTGGAGCTGGAGACATCAGGTCTAACAATGGGCTTGCTGCCCACATTTTCCTCTGCAACACCTCCATGAGGAACAGTTCAGATGGAGACTTCTTGATTGGAATGCGGTTCAGCATAGATGTCTTCGAGGAGACCAGGGGCTACATCCTGGAGGTCTACGGCGTCCAYTTTGAGTTGCCTGACCTGGGACCGATTGGAGCCAATGGCTTGGCCAATCCTCGTGATTTCTTGATACCTGTTGCCTGGTATGAAGATCACCAAGTGCCAGGTGGTTACACTGATGTCTCCCCGTTCAATGTTGTGGCCTGGCATGGGAATTACACGCCCTACAAGTACAACTTGGAGAACTTCATGGTCATCAACTCAGTGGCCTTTGACCACGCAGACCCATCCATTTTCACGGTATTGACTGCCAAGTCTGTCCGCCCCGGAGTGGCCATCGCTGATTTTGTCATCTTCCCACCGCGATGGGGAGTTGCTGATAAGACCTTCAGGCCTCCTTATTACCACAGGAACTGCATGAGTGAATTCATGGGACTCATCAAAGGTCACTATGAGGCAAAGCAAGGTGGGTTCCTGCCAGGGGGAGGCAGCCTGCACAGCCCAATGACGCCCCATGGGCCTGATGCCGACTGCTTTGAGAAGGCCAGTAAAGCCAAGCTGGCACCTGAGAGGATTGCTGATGGCACCATGGCATTTATGTTTGAGTCTTCTCTAAGTATGGCCGTCACCAAGTGGGGGCTGAAGACCTCTAATTGTTTGGATGAGAACTACTACAAGTGCTGGGAAMCTCTCAAGAGCCACTTCACCCCCAATTCCAGGCACCCTGCAGGAACTAAT

Related Sequences

bmy_10106T0 Protein

Length: 563 aa      View alignments
>bmy_10106T0
HNSRKRLRIPELQSQKELREALVQAVVFRGFAVVSAQEKEVRTLSAQTFLPPFAERNNAAVEQSEATVILSGFRQDWSAIPFHRTEDNFGSLPFLSSSDSIFLMYISGFGNECASEDPRCPGALPEGQNNPQVCPYNLYAEQLSGSAFTCPRSSNKRSWLYRILPSVSHKPFESIDQGHVTHNWDEVDPDPNQVTWSCELENSMSPSAKLAENNFVSVFPENLWFANLRLVLFKHPCYLLRWKPFEIPKASQKKVDFVSGPAGGLASFTFPSRAGLSQGLHTLCGAGDIRSNNGLAAHIFLCNTSMRNSSDGDFLIGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPVAWYEDHQVPGGYTDVSPFNVVAWHGNYTPYKYNLENFMVINSVAFDHADPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIKGHYEAKQGGFLPGGGSLHSPMTPHGPDADCFEKASKAKLAPERIADGTMAFMFESSLSMAVTKWGLKTSNCLDENYYKCWEXLKSHFTPNSRHPAGTN