Sequence detailsbmy_10186 (Coding sequence)

Part of scaffold_510 (SequenceType object (1))

For more information consult the page for scaffold_510 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SF1ENSTTRG00000008857 (Bottlenosed dolphin)

Gene Details

splicing factor 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000008399, Bottlenosed dolphin)

Protein Percentage 93.26%
cDNA percentage 94.99%
Ka/Ks Ratio 0.68749 (Ka = 0.0468, Ks = 0.0681)

SF1ENSBTAG00000001035 (Cow)

Gene Details

splicing factor 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000001376, Cow)

Protein Percentage 100.0%
cDNA percentage 96.68%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.1108)

SF1 (Minke Whale)

Gene Details

splicing factor 1

External Links

Gene match (Identifier: BACU005321, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.5%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0144)

Additional orthologs identified in other species via the OPTIC pipeline.

SF1 (Human)   Sf1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1947 bp    Location:166511..152207   Strand:-
Raw sequence 
>bmy_10186
ATGGCGACCGGAGCGAACGCCACGCCGCTGGACCCAGGCCCAGGTCCCCTTCTAGTGGCCATGTCTCTTGACTTCTCAGACTTTCCCAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACGGTGATTCCAGGAATGCCTACAGTTATCCCCCCTGGACTTACTCGGGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGGTCCCCTTCCCCTGAGCCCATCTACAATAGCGAGGGGAAGCGGCTTAACACTCGCGAGTTCCGCACCCGCAAAAAGCTTGAAGAGGAGCGGCATAACCTCATCACGGAAATGGTTGCCCTCAACCCTGATTTCAAGCCACCTGCAGATTACAAACCTCCAGCAACACGTGTGAGCGATAAAGTAATGATTCCACAAGATGAGTATCCAGAAATCAACTTTGTGGGGCTGCTGATTGGGCCCAGAGGGAACACCTTGAAGAACATAGAGAAGGAGTGTAATGCCAAGATCATGATCCGGGGGAAAGGCTCTGTGAAAGAAGGGAAAGTCGGGCGCAAAGATGGCCAGATGCTGCCAGGAGAAGATGAGCCGCTTCATGCCCTGGTTACTGCCAATACCATGGAGAATGTGAAGAAAGCAGTAGAACAGATAAGAAACATCCTGAAGCAGGGTATCGAGACTCCTGAGGACCAGAACGATCTACGGAAGATGCAGCTTCGAGAGTTGGCTCGTTTGAATGGGACTCTTAGGGAAGATGATAACAGGATCTTAAGACCCTGGCAGAGCTCGGAGACCCGCAGCATTACCAATACCACAGTGTGTACCAAGTGTGGAGGGGCTGGCCACATTGCTTCCGATTGCAAATTCCAAAGGCCTGGTGACCCCCAGTCAGCTCAGGATAAAGCGCGGATGGATAAAGAATACTTGTCCCTCATGGCTGAACTGGGGGAGGCACCTGTGCCCGCATCTGTGGGCTCCACCTCTGGGCCTGCCACCACACCCCTGGCCAGTGCACCTCGGCCTGCTGCTCCCGCCAACAATCCACCTCCGCCGAGCCGCCCACCCTGGATGAATTCTGGCCCGTCAGAGAGTCGGCCCTACCATGGCATGCACGGAGGTGGCCCTGGTGGGCCCGGAGGTGGCCCGCACAGCTTCCCACACCCGTTACCCAGCCTGACGGGCGGGCACGGTGGACATCCCATGCAGCACAACCCGAATGGACCCCCTCCTCCTTGGATGCAGCCGCCGCCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGGATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGGTATGATGCCGCCGCCACCTATGGGCATGATGCCGCCGCCGCCGCCGCCTCCCAGTGGGCAGCCTCCACCCCCTCCCTCTGGTCCTCTTCCCCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGTACCCCTTTGCCATGGCAGCAAAATACGACGACTACCACCACGAGCGCTGGCACAGGGTCCATCCCGCCATGGCAACAGCAGCAGGCGGCTGCCGCAGCTTCTCCAGGAGCCCCTCAGATGCAAGGCAACCCCACTATGGTGCCCCTGCCCCCAGGGGTCCAGCCGCCTCTGCCGCCCGGGGCCCCTCCCCCTCCGCCGCCTCCGCCGCCTGGTTCCGCCGGCATGATGTATGCCCCGCCCCCTCCTCCTCCGCCTCCCATGGACCCTTCTAACTTTGTCACCATGATGGGCATGGGGGTGGCGGGCATGCCACCCTTCGGGATGCCTCCAGCTCCCCCACCGCCTCCACCACAGAACTAG

Related Sequences

bmy_10186T0 SequenceType object (3)

Length: 649 aa      View alignments
>bmy_10186T0
MATGANATPLDPGPGPLLVAMSLDFSDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPAAPANNPPPPSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMGMGVAGMPPFGMPPAPPPPPPQN*