Part of scaffold_533 (Scaffold)

For more information consult the page for scaffold_533 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RP1 ENSTTRG00000011854 (Bottlenosed dolphin)

Gene Details

retinitis pigmentosa 1 (autosomal dominant)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011240, Bottlenosed dolphin)

Protein Percentage 86.94%
cDNA percentage 89.62%
Ka/Ks Ratio 0.71712 (Ka = 0.026, Ks = 0.0362)

RP1 ENSBTAG00000011203 (Cow)

Gene Details

Oxygen-regulated protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014879, Cow)

Protein Percentage 78.87%
cDNA percentage 87.35%
Ka/Ks Ratio 0.49183 (Ka = 0.1173, Ks = 0.2384)

RP1  (Minke Whale)

Gene Details

retinitis pigmentosa 1 (autosomal dominant)

External Links

Gene match (Identifier: BACU002332, Minke Whale)

Protein Percentage 91.66%
cDNA percentage 93.85%
Ka/Ks Ratio 0.61925 (Ka = 0.0583, Ks = 0.0941)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 5634 bp    Location:467864..484183   Strand:+
>bmy_10324
ATGCTAGTGAGCACATATGTACCTTCAAGCCCAAGGTCTCAAATTTATTCTGTTTCTTCTGACAAAATGCAGAGTAATGATTGCTACTCAGACCATTCTTTTGCTTCTGAAAATTACTTGGCCTTAGAAAAAAATGATTCTCAGAATTTATTGATATATCCTTCTGAAGATGATGTTGAGAAATCAATTATTTTTAATCAAGATGGCACTATGACAGTTGAGATGAAAGTTCGATTCAAGATAAAAGAGGAGGAAACCATAAAATGGACAACCACTGTCTGTAGAGCTGATCTTTCTAATAATGATGAAAAGAGTGAGATAAGCAGTTTCCCAGGAAGAACAGATGATGGATCATCTGGTTTAAAGATTACAGCATGTTCATTGTCTGCAGATGTCTCACCTCTGGAGAAAGGCAATAATCAAGAGGGCAGTTTGGCAGAGGAGATCAACAGTCCAATGAGAGATCAGGATACTGAAACTTGCAATTCTGCTAGTTGGGAGAATGCTGCTATGGACACAAATGCCACCCAGGGAACTCAGAATCAAGCTAAACATCATTTTTATAGGCCCCCTACACCTGGACCAAGGAGAGTCAGGCAAAAGAAATCTGTGATAGGGAGTGTGACCTTAGTATCTGAAACTGAAGTGCAAGAGAAAATGATTGGGCAGTTTTCCTATAGTGAAGAAAGGAAAGATGGGGAAAACAAATCTGAGTATCACATGTTCACACATTCTTGCAGTAAAATGTCATCAGTATCCAACAGACCGGTACTTGTTCAAGTTGCTAACAATGAGCAGGTAGAGTCATCTTTAGAAAGAAAAAAGGAAAGCAGCCTGCTCAAATCAAACGCACTAAGCGCTGGTGTTGTAGAAATTACAAGTCAGAAGATGTTAGAGATGTCCCATAATAATGGCTTGCCACAGACTACGTCAGAAAACTCAGTTGTGGAGGAAAGTATAGTTGATAGTGTAACAGCAGACAACAAAACTAGTGTCAAGAATTTAAGAACTTATGGTAACACCAATGATAGATCCAGTCCTCTTTTAGCAGATGCAACTCATTCTTCAGGTAACAACTCTGGAACTGACAAAACTATTTCAGAGACCCCAGCTTCAGTAGGATCCTCTACTGTCACCACAAGAATTGAAAAACTAATTAGTGAGTTTTCTCAGTGTGGTTTAACAGAACTTCCAGAAAATGAAAAGCAGATTTCATCATCTGTTGCCAGCAAAAAGAAGATGAAATCTCAGCAGCATGTGATAAATTCCAAGCATCAGGGTGGGGAGATTGCAAGGAAAGGAATCCCCAGGAAGAGTAAGAGAATGAACACAAGAGGTAGAATTGCACAGGAAACCATGCTGCAAGATTCACGTAGTCCCCTTAAAGGAGAGATACTTTGTGAGAAAGACCTCCATGCAAGTGATATGGTAATTGAATCAAATTATTTCTCTTCCAAAAGTAATAATGCTGTGAATTCCAGGAATCTCTCTAGAAATAAATTAAATACTATTCATAATCCTAAGGTTCAGGGACTTTTAGCCAAAAGAAAATCCAGACCACTAAACAAAGTACACTTAGGAGGACCTACAAAAGGAGAAATTGGTCAAGGAGAAAAAGTGTTTTCCCATAATGAATTTAGATATTGCAAAAATACTTTTGAAAATCAAAATTTATTTCATATGTTTAACTTTCTTGAGCAGAAACCCAATGCTTTTTGTGGACCACAGGCTCAAACAGAAAGAGCATCTTGGTATTTGAGAGGAACGTCAAAGAAGAGTTTAGTTTCAAAAGTTAATAGTTCACACATAACTTTAAGAAGCCAGAAAAAACAAAAAGGGGATAGGTTGAAATCAGATACTATTGTAAGTAAACAGCATGTCACAACCAGGGCAAATTCCTTAGCTTCTTTGAAAAAAGCTGTTTTTCCTGAGGCTATTACCCATCATTCAGTTCAAAATTATGTGCAGAGATGGTTGCAGAACATAAGTTCAGATTCAGCTTTGCAACCTAGACAGTCAGCTCCAATATGCACAAAGGAAAGGAGTGTGGTAGGTTATAACAACAGTTGTTTTCCAAGAAATAATTCCCACAAAAGTTCTGGAAAAGGAAATAATTTTGTCCTGGAAGGTAATAAACATATAACTGAAAATGCCAGTTTGACAGGAGATAATCTAGGGAAAGAGGTCGGTACATCTTTTGACAAAGATAACAGTGAAGAACTTACCAAAGATCTCTGTGGGAGCCAGGTTGAATCTCTGAAGGATGCTTACTTGCTTTCCATTCATGAATATTGTACTTTGTCACAGTCAGCTATTGATGATGCTAATACTAAAAGTCAGGTATCTGCTGAAAAGTCAGGACAAGAGGTAAGCCTTGTTTACAAAGACCTAAACCTAGCTGCAAAAGGGCAAAGTGTAGAGGCTGCCATTCAAGTAGATCTTATGGAAGAGGACACTCCAAAACACCTGTTACCAGTCTGGTTGCTTCGCCAACTGCAAGCTTTAGTTCCTAGTAGTCACAAGACTCGGAATGGAGTTGTTCAAATGCCAGGTTCACTTGCAGATATTCCCTTTCCTTCTCCGATATATAATTCATCCACTAATGTTCTTCTAGCTTGGCTCCTGGTGCTAAACCTAAAGGGAGGTATGAATAGCTTCTGTCGAGGTGATGCTCACAAGACTACCAGCAGAACTTCAGAAATACTTGCGTTGTTGGAGGTTCTGAAGGACATTGCCGTCACAGAGGAAGCGGATGACTTGAAGGCTGCTGTTGCCAGTTTAGTGGAATCAACCACAAATCACTTTGGACTCACTGAGAAAGAACAGGACATGGTTCCAATAGATCTTTCTGCAAATTGTTCTACACCCAACATTCAGATAGTTCCTAAATGCATTGAAAATGAGAAAACACAGAAAATCTCCTCTTTAGATGGAGGCTGTTCTGCCAGTGAGGACAGTGTCTCTGAAGTCTGTGTTTCAGAGTTGACTTGCTCTCCATGTGAGATGTGCACTGTGAATAAGACTTATCCTCCAAAAGAGACTTGGAACCTCAGTGATAATTCTTTCCCCAGTGTTGGCTGTACCACGGATCAGACCTCCATGAATAAGGCTTGTTTCCTAGGAGAGGTCTCTTCACTTACTGACACTGTGTCTTCTCATAAGGCTTGTGCTTATGAGGAAAACCATATCTGTGAGACGGCTTGCCCAGGGGATGAGGCCTACATTCCCATCAAAGTCTGCAATACCAGTGACTTTTTAAATTCCAAAGAAAACACATATACTGATAATTTGGAATTGACCGAAGAGTTAGAAAGAGTTGGTGAAGTTCAGAAAGACCTAAATATTTTGGCAGACCCTGGGTGTAAACATGGCTTTAGTATATTGGTGTCACACCAAAATGTCAGTAATTTAAGCCACGGTGGCTTTTTCCAAGATGCAACTGAACCAGAACTTCATAGGAAACATAGTTCTCTAGATGAATTTAAAAATTGTTCATTAAAGAAATTTCAGGATAAAAATGCATATACATCTTTTGATAAGGAAGACTCAAAGACTTCTGAAGAACCAGGCTCAATAACCAACAGCATGACATCAAGTGAAAGAAACATTTCAGAATTGGAATCTTCTGAAGAATTAGAAAACCAGAACACTGATATCTTTACTACAAAGGTAAATTCAGGAGAGCAAGCTACTGAAGAATTGATCCAAAAGGAGTTAGAGGCTAGTAAAAATTTGGAATTGATCAAAGTCTCTAGCAGGAACATTACAGAAGGAGAAGGAAGGAATGGTGTCATTTGTGAGACAATCAGTAGGAGGCTGGCAACACCACCATCTTTAGTATTTTGCTATGATTCTAAGCAAAATACTGAAAAGCAGCTCATTGAAGGAGAAACTGAAATGAGAGTAAGAAAGATGGTGGAAAGTGTGGAAACTGGAAGTTTTGCAGAGTCTCCCCTTAATTTTAAAAATGACTTCAAAAGGTCAGGGACTTCTGATTGGTCAGATTATAGACAAGACAGTGAGAATGAACAGTCATATAAAACATCCAGTGATGGCCCCAGTGACGGTGGTGAGGAGATGGCCCAAGAGAAAGAATATAATAAAGGATTTGTTAAAAGGACAATAGAAAAACTTTATGGTAAAGCAGAGATTATGAAACCATCTTTTTTTTCTGGGTCTACACACACATCTCAGGTTTGTCCTTATGATTCTATGGAATTTCGGGGTGCTGGGAAAGTAGGTCTTTATGATTCTGAAGGTCAGTCATTTGGCTCTTCTGAACAGGTATCTAGTAATTCAACTGTGTTGCAGAAATTTCAGGAGGAAAGGCGAGATAAATGTGATTTTAATAATGTGAGGGCCAGTTACCATGGGGAAGACATTGTGGAACATGGTACTGAACAAAATGGTCATAACAGAATTCTCAGAGACATGGAAGAGGGGGTACTGATTGACAAGGGCAAGTGGCTYCTGAAAGAAAATCATTTGCTAAGAGTATCATCTCTTGAAAATTCTGGCATGTATGGCAATGCAGACACCACATCACTGGATACTCTACTTGATAATAACAGCAATGAGGTACCGTATTCACATTTTGGAAATTTGGCCCCAGGCCCAAACATGGCTGAACTGTCCTCTTCAGAATTGGAGGAACTGACTCAACCTCCTGAACTGAGATGCAATTATTTTAACATGCCTCATTGTAGCGACTCTGAGCCTTTTCGCGAGGATTTGCTGGATGTTCAAAATAAAACTTGTTCTCAGGAGAGAATACCAAACCACCATGCAGAGGAGAAGGGTAATCATAGGTCAGAGAGAGTATGCACATCTGTCACTCATGTCTTCACATCTGCTGGTAACAAAGTCCATCCTGTCTCTGATGATACTATTAAAAACCAACCATTGCCTGGTAATAATGTAATTCACAGTGCACTTCAGGAAGGTGACTCTTTGGATAAACTCTATAATATTTGTGGTCAACATTGCCCAATACTAACTGTTATTAACCAGCCTGTAAATGAGGAACACCGAGGGTTTGCATATTGCAAAGATTCTGATATTGAAAATTCTTTGAGTCTCCAATTATGGATGAAAATACACCCATGTTTACTACAGTCAAACAAAAACATGTTCAGAGATAAGAACAATAAAGCAAGTAGTAGAAAAGCATTTATTGATAATGCCATTGGCAGTACATTTGATTGGCTTTATTTTAATAGCACATTTGACTTGATGGATAAAAGGAGAAAATTAAAAAGAATTAACTTCTTGGGCTTAGAGGAAGAAAATAATTTAAATAAGTTTCAATCATATTTAAAGAATTTCTTGCACACATTGTTGCTAGTTGTGGGTCATGTGAATTCAAATACACAAAACCCCGGAAATCAGACAAATGAAATCTTTGAAGTAGTTGATGAGAATAACAACGTACTAAATAACAGATTCCAGAACTCAAGAACAAATCTCAACCAAGTAGTAAGAGAAAATAACTATCATTGCTCCTTTGAAATGCTTGGCCAAGACTGCCTATTTTGCCAAGTTGAGGCATCCTTAGATATCAGCAACAGAAGCATATTAGAAATATTTTATATTTTTGAAGATGAAAATCTTTTCATTTGGGAAGAGGAAAACTAA

Related Sequences

bmy_10324T0 Protein

Length: 1878 aa      View alignments
>bmy_10324T0
MLVSTYVPSSPRSQIYSVSSDKMQSNDCYSDHSFASENYLALEKNDSQNLLIYPSEDDVEKSIIFNQDGTMTVEMKVRFKIKEEETIKWTTTVCRADLSNNDEKSEISSFPGRTDDGSSGLKITACSLSADVSPLEKGNNQEGSLAEEINSPMRDQDTETCNSASWENAAMDTNATQGTQNQAKHHFYRPPTPGPRRVRQKKSVIGSVTLVSETEVQEKMIGQFSYSEERKDGENKSEYHMFTHSCSKMSSVSNRPVLVQVANNEQVESSLERKKESSLLKSNALSAGVVEITSQKMLEMSHNNGLPQTTSENSVVEESIVDSVTADNKTSVKNLRTYGNTNDRSSPLLADATHSSGNNSGTDKTISETPASVGSSTVTTRIEKLISEFSQCGLTELPENEKQISSSVASKKKMKSQQHVINSKHQGGEIARKGIPRKSKRMNTRGRIAQETMLQDSRSPLKGEILCEKDLHASDMVIESNYFSSKSNNAVNSRNLSRNKLNTIHNPKVQGLLAKRKSRPLNKVHLGGPTKGEIGQGEKVFSHNEFRYCKNTFENQNLFHMFNFLEQKPNAFCGPQAQTERASWYLRGTSKKSLVSKVNSSHITLRSQKKQKGDRLKSDTIVSKQHVTTRANSLASLKKAVFPEAITHHSVQNYVQRWLQNISSDSALQPRQSAPICTKERSVVGYNNSCFPRNNSHKSSGKGNNFVLEGNKHITENASLTGDNLGKEVGTSFDKDNSEELTKDLCGSQVESLKDAYLLSIHEYCTLSQSAIDDANTKSQVSAEKSGQEVSLVYKDLNLAAKGQSVEAAIQVDLMEEDTPKHLLPVWLLRQLQALVPSSHKTRNGVVQMPGSLADIPFPSPIYNSSTNVLLAWLLVLNLKGGMNSFCRGDAHKTTSRTSEILALLEVLKDIAVTEEADDLKAAVASLVESTTNHFGLTEKEQDMVPIDLSANCSTPNIQIVPKCIENEKTQKISSLDGGCSASEDSVSEVCVSELTCSPCEMCTVNKTYPPKETWNLSDNSFPSVGCTTDQTSMNKACFLGEVSSLTDTVSSHKACAYEENHICETACPGDEAYIPIKVCNTSDFLNSKENTYTDNLELTEELERVGEVQKDLNILADPGCKHGFSILVSHQNVSNLSHGGFFQDATEPELHRKHSSLDEFKNCSLKKFQDKNAYTSFDKEDSKTSEEPGSITNSMTSSERNISELESSEELENQNTDIFTTKVNSGEQATEELIQKELEASKNLELIKVSSRNITEGEGRNGVICETISRRLATPPSLVFCYDSKQNTEKQLIEGETEMRVRKMVESVETGSFAESPLNFKNDFKRSGTSDWSDYRQDSENEQSYKTSSDGPSDGGEEMAQEKEYNKGFVKRTIEKLYGKAEIMKPSFFSGSTHTSQVCPYDSMEFRGAGKVGLYDSEGQSFGSSEQVSSNSTVLQKFQEERRDKCDFNNVRASYHGEDIVEHGTEQNGHNRILRDMEEGVLIDKGKWLLKENHLLRVSSLENSGMYGNADTTSLDTLLDNNSNEVPYSHFGNLAPGPNMAELSSSELEELTQPPELRCNYFNMPHCSDSEPFREDLLDVQNKTCSQERIPNHHAEEKGNHRSERVCTSVTHVFTSAGNKVHPVSDDTIKNQPLPGNNVIHSALQEGDSLDKLYNICGQHCPILTVINQPVNEEHRGFAYCKDSDIENSLSLQLWMKIHPCLLQSNKNMFRDKNNKASSRKAFIDNAIGSTFDWLYFNSTFDLMDKRRKLKRINFLGLEEENNLNKFQSYLKNFLHTLLLVVGHVNSNTQNPGNQTNEIFEVVDENNNVLNNRFQNSRTNLNQVVRENNYHCSFEMLGQDCLFCQVEASLDISNRSILEIFYIFEDENLFIWEEEN*