Sequence detailsbmy_10378 (Coding sequence)

Part of scaffold_531 (SequenceType object (1))

For more information consult the page for scaffold_531 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SNAPC5ENSTTRG00000010201 (Bottlenosed dolphin)

Gene Details

small nuclear RNA activating complex, polypeptide 5, 19kDa

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009669, Bottlenosed dolphin)

Protein Percentage 97.89%
cDNA percentage 95.44%
Ka/Ks Ratio 0.06109 (Ka = 0.0097, Ks = 0.1596)

SNAPC5ENSBTAG00000005210 (Cow)

Gene Details

snRNA-activating protein complex subunit 5

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000006862, Cow)

Protein Percentage 93.81%
cDNA percentage 92.1%
Ka/Ks Ratio 0.11718 (Ka = 0.0329, Ks = 0.2807)

SNAPC5 (Minke Whale)

Gene Details

small nuclear RNA activating complex, polypeptide 5, 19kDa

External Links

Gene match (Identifier: BACU019669, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 97.94%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.0781)

Additional orthologs identified in other species via the OPTIC pipeline.

SNAPC5 (Human)   Snapc5 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 297 bp    Location:643098..646835   Strand:+
Raw sequence 
>bmy_10378
ATGTTGAGCCGGCTTCAGGAGCTGCGCAAGGAGGAGGAGACGCTGCTCCGCTTGAAAGCGGCCCTGCACGACCAGCTGAACCGGCTCAAGGTTGAAGAACTGGCCCTCCAGTCAATGATTAGTTCTAGAAGAGAAGATGAGATGCCGTCTTCTCAACCTGCGCCTGAACAGTCACATGATCAGATGTTGGTGCATGTAGACAATGAAGCATCAATCAACCAGACTGCACTGGAGTTGAGCACCAGGAGCCATGTGCCAGAAGAGGAAGAGGAGGAGGAAGAAGAATCCGATTCCTGA

Related Sequences

bmy_10378T0 SequenceType object (3)

Length: 99 aa      View alignments
>bmy_10378T0
MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRREDEMPSSQPAPEQSHDQMLVHVDNEASINQTALELSTRSHVPEEEEEEEEESDS*