Part of scaffold_546 (Scaffold)

For more information consult the page for scaffold_546 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NUP205 ENSTTRG00000016679 (Bottlenosed dolphin)

Gene Details

nucleoporin 205kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015820, Bottlenosed dolphin)

Protein Percentage 94.68%
cDNA percentage 94.27%
Ka/Ks Ratio 0.2005 (Ka = 0.0097, Ks = 0.0484)

NUP205 ENSBTAG00000011127 (Cow)

Gene Details

nuclear pore complex protein Nup205

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000042092, Cow)

Protein Percentage 97.82%
cDNA percentage 93.47%
Ka/Ks Ratio 0.05288 (Ka = 0.013, Ks = 0.2461)

NUP205  (Minke Whale)

Gene Details

nucleoporin 205kDa

External Links

Gene match (Identifier: BACU006766, Minke Whale)

Protein Percentage 98.63%
cDNA percentage 98.47%
Ka/Ks Ratio 0.33785 (Ka = 0.0103, Ks = 0.0305)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3729 bp    Location:46740..264   Strand:-
>bmy_10384
ATGGCGACGCTGTTGGCGGTAAATTCGGCTGCTAGTCTGTGGGGTCCTTACAAAGACATTTGGCAGACTGTGGGAAATGCTCTTTGGAGAAGACAACCTGAAGCTGTCCACCTTCTTGACATGATTTTGAAGAAACACAAACCTGACTTCATCTCATTGTTCAGAAACCCACCAAAAAATGTTCAACAACATGAGAAGGTTCAGAAAGCCAGTACAGAGGGAGTTGCTATCCAGGGTCAACAGGGAACCCGACTTCTTCCTGAACAGCTCATTAAAGAAGCCTTTATCCTCAGTGACCTTTTTGATATTGGAGAATTGGCAGCTGTTGAGCTTCTCCTTGCTGGAGAGCACCAGCAGCCACATTTTCCTGGCCTCACCAGAGGCTTGGTAGCTGTTCTTTTATACTGGGATGGAAAGCGGTGCATTGCAAATTCCCTGAAAGCCTTGATACAGTCTCGACGAGGAAAGACATGGACCCTCGAACTCAGTCCAGAGCTGGTTTCCATGACAACACGGTTTACTGATGAGCTGATGGAGCAAGGATTGACTTACAAAGTTCTTACTCTTGTGTCACAGATTGATGTTAACAATGAGTTTGAGAAACTACAGCGTGAGAGAGGTTTGGGCAGTGAAAAACATCGAAAAGAGGCAAGGGTTTCTGATCTCATCAAGGAGTGCAGGCAGTCTCTGGCAGAAAGCCTTTTTGCCTGGGCTTGCCAATCACCTTTAGGCAAAGATGACACTCTGCTCCTTATTGGACATTTGGAAAGAGTGACTGTTGAGGCTAATGGCTCGTTGGATGCAGTGAATCTGGCTCTTCTTATGGCACTTCTGTACTGCTTTGATATCAGTTTTATAGAACAAAGCACAGAGGAACGTGATGATATGATTCATCAACTTCCACTGTTGACAGAGAGACAATATATTGCAACAATTCACTCTCGTCTTCAAGACTCACAGCCTTGGAAACTGCCGGGGCTGCAAGCCACTGTGAGACTTGCCTGGGCACTGGCGTTGAGGGGGATATCTCAGCTCCCTGATGTGACAGCTCTGGCTGAATTCACAGAAGCAGATGAAGCAATGGCAGAGCTCGCAATTGCAGACAGTGTTTTCCTGTTCCTCACTGAATCCGTAGTGGTGTCAGAAAACTTCTATCAGGAGGAATTTTATATTCGTAGAATCCATAATCTCATTACAGATTTCCTGGCACTTATGCCAATGAAGGTGAAGCAGTTGAGGAATCGGGCAGATGAAGATGCTCGAATGATTCACATGAGTATGCAGATGGGCAACGAACCCCCCATTTCACTTAGAAGGGATCTGGAACAATTAATGCTCTTGATTGGTGAGCTGTATAAAAAGAATCCTTTTAATTTGGAGCTTGCACTAGAATACTGGTGTCCCTCAGAGCCTCTTCAGACTTCCACTATCCTGGGTTCTTACCTTGGGGTGGCTCATCAGCGACCCCCTCAGCGCCAGGTTGTCTTGTCAAAGTTTGTTAGGCAAATGGGTGACCTGTTGCCTCCAACTATTTATATTCCTTATTTGAAAATGCTCCAGGGATTGGCCAATGGGCCCCAGTGTGCCCACTACTGTTTTAGTCTACTCAAAGTCAATGGTAGCAGTCATGTTGAAAATATTCAGGGGGCAGGCGGCAGTCCTGTTTCCTGGGAACATTTCTTTCACTCCTTGATGCTTTACCATGAACACCTGCGGAAGGATCTTCCGAGTGCTGATAGTGTCCAGTACCGTCACCTTCCTTCACGTGGCATCACCCAGAAGGAGCAGGACGGGTTGATTGCTTTTTTACAGCTCACATCTACCATCATTACTTGGAGTGAAAATGCTCGTTTGGCACTCTGTGAACATCCTCAGTGGACCCCCGTGGTGGTGATTCTGGGACTCCTGCAATGCAGTATCCCTCCTGTATTAAAGGCCGAACTATTGAAGACACTTGCAGCGTTTGGAAAATCTCCTGAAATTGCTGCTTCTCTCTGGCAGTCATTGGAATACACTCAGATACTGCAAACCGTAAGAGTTCCAAGCCAGAGGCAAGCTATTGGTATTGAGGTGGAACTAAATGAGATAGAATCCCGATGTGAAGAATACCCATTAACTCGTGCCTTTTGCCAGCTAATTAGTACCCTGGTGGAGAGCTCCTTTCCTTCTAATTTGGGCGCTGGACTGCGGCCTCCCGGCTTTGACCCTTATTTGCAGTTCCTTAGAGATTCTGTGTTTCTCCGATTCCGTACAAGAGCTTACCGGAGAGCAGCTGAAAAGTGGGAAGTCGCTGAGGTTGTTTTGGCGGTGTTTTATAAATTGCTCAGAGATTATGAACCTCAACTTGAAGATTTTGTAGACCAGTTTGTGGAACTACAAGGAGAAGAAATCATAGCCTATAAGCCACCAGGATTTAGTCTGATGTATCATCTTCTGAATGAGTCACCAATGTTGGAGCTTGCTCTTAGTTTACTGGAGGAAGGCGTTAAGCAGCTTGATACCTATGCTCCTTTCCCTGGGAAGAAACACCTGGAGAGAGCAGTGCAACATTGCCTTGCACTTCTCAATCTTACTCTGCAAAAGGAAAACCTCTTTATGGATCTCCTAAGAGAGAGTCAGCTGGCTCTAATAGTCTGTCCTTTAGAACAGCTATTGCAGGGAATCAATCCCAGAACTAAGAAGGCTGATAATGTGGTGAACATTGCTAGATACCTATATCATGGCAATACTAATCCAGAATTGGCTTTTGAAAGTGCCAAGATCCTCTGCTGTATCTCTTGCAATTCCAATATTCAGATAAAATTGGTTGGAGATTTCACACATGACCAGAGTGTAAGTCAGAAGCTGATGGCTGGATTTGTGGAGTGTTTGGATAGTGAAGATACAGAAGAATTTGTACGTCTAGAAGAGGGATCAGAACTTGAAAAGAAATTAGCTGGAATCCATCATGAAACAAGAATCCACATCTTGAATCTTCTCATCACCTCTCTGGAACGCAATCCRCCAAATCTTGCTCTCTACCTATTGGGCTTTGAATTGAAGAAACCTGTGATATATCAGTTATGTGCATGCTCTGATACATCTGGTCCTACTATGAGATACTTGAGAACCAGCCAGGACTTCTTATTTTCTCAGTTGCAACATTTACCATTTTCTAACAAAGATGGGGAAGGAGGAATAGAAGATGAAAATAGGTCTGTCTCTGGGTTCCTGCACTTTGACACTGCTACAAAAGTACGTCGAAAAATTCTCAGTATTCTCGACTCCATTGACTTCAGTCAGGAGATCCCCGAGCCTTTGCAATTGGATTTCTTTGATCGGGCCCAGATTGAACAAGTTATTGCTAACTGTGAACACAAGAATTTACGGGGACAGACAGTCTGCAATGTCAAGCTTCTTCATAGAGTTCTTGTAGCCGAAGTAAATGCCCTTCAGGGTATGGCAGCCATAGGACAGAGACCTCTACTAATGGAGGAAATCAGCACTATACTTCAGTACGTGGTAGGAAGAAACAAATTGTTGCAGTGTCTTCATGCAAAACGGCATGCTCTGGAGTCTTGGAGGCAGCTGGTAGAAATTATACTGACAGCTTGCCCTCAGGACCTCATTCAGGCAGAGGATCGACAACTGATTATTCGTGATATTTTACAAGATGTGCATGATAAGGTGACATGCTTCATAAGTTACTTTATACTGCCAAACGAATATTTATATCATTTAAACATATAG

Related Sequences

bmy_10384T0 Protein

Length: 1243 aa      View alignments
>bmy_10384T0
MATLLAVNSAASLWGPYKDIWQTVGNALWRRQPEAVHLLDMILKKHKPDFISLFRNPPKNVQQHEKVQKASTEGVAIQGQQGTRLLPEQLIKEAFILSDLFDIGELAAVELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCIANSLKALIQSRRGKTWTLELSPELVSMTTRFTDELMEQGLTYKVLTLVSQIDVNNEFEKLQRERGLGSEKHRKEARVSDLIKECRQSLAESLFAWACQSPLGKDDTLLLIGHLERVTVEANGSLDAVNLALLMALLYCFDISFIEQSTEERDDMIHQLPLLTERQYIATIHSRLQDSQPWKLPGLQATVRLAWALALRGISQLPDVTALAEFTEADEAMAELAIADSVFLFLTESVVVSENFYQEEFYIRRIHNLITDFLALMPMKVKQLRNRADEDARMIHMSMQMGNEPPISLRRDLEQLMLLIGELYKKNPFNLELALEYWCPSEPLQTSTILGSYLGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQGLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLMLYHEHLRKDLPSADSVQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQCSIPPVLKAELLKTLAAFGKSPEIAASLWQSLEYTQILQTVRVPSQRQAIGIEVELNEIESRCEEYPLTRAFCQLISTLVESSFPSNLGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVLAVFYKLLRDYEPQLEDFVDQFVELQGEEIIAYKPPGFSLMYHLLNESPMLELALSLLEEGVKQLDTYAPFPGKKHLERAVQHCLALLNLTLQKENLFMDLLRESQLALIVCPLEQLLQGINPRTKKADNVVNIARYLYHGNTNPELAFESAKILCCISCNSNIQIKLVGDFTHDQSVSQKLMAGFVECLDSEDTEEFVRLEEGSELEKKLAGIHHETRIHILNLLITSLERNPPNLALYLLGFELKKPVIYQLCACSDTSGPTMRYLRTSQDFLFSQLQHLPFSNKDGEGGIEDENRSVSGFLHFDTATKVRRKILSILDSIDFSQEIPEPLQLDFFDRAQIEQVIANCEHKNLRGQTVCNVKLLHRVLVAEVNALQGMAAIGQRPLLMEEISTILQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQDLIQAEDRQLIIRDILQDVHDKVTCFISYFILPNEYLYHLNI*