Part of scaffold_546 (Scaffold)

For more information consult the page for scaffold_546 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CALD1 ENSTTRG00000003108 (Bottlenosed dolphin)

Gene Details

caldesmon 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002912, Bottlenosed dolphin)

Protein Percentage 96.92%
cDNA percentage 97.89%
Ka/Ks Ratio 0.3741 (Ka = 0.0143, Ks = 0.0382)

BT.59726 ENSBTAG00000013953 (Cow)

Gene Details

non-muscle caldesmon

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000018566, Cow)

Protein Percentage 66.85%
cDNA percentage 74.41%
Ka/Ks Ratio 0.41646 (Ka = 0.2792, Ks = 0.6703)

CALD1  (Minke Whale)

Gene Details

caldesmon 1

External Links

Gene match (Identifier: BACU006773, Minke Whale)

Protein Percentage 98.12%
cDNA percentage 98.92%
Ka/Ks Ratio 0.44824 (Ka = 0.0082, Ks = 0.0183)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1761 bp    Location:572876..539071   Strand:-
>bmy_10398
ATGCAAAACAACACAGCAGAAAATGAAATGGCAGAGAAGGAAGAAAAAAGYGAAAGTCGCCAAGAAAGATACGACATAGAGGAAACAGAAATAGTCACCAAGTCCCACCAGAAGAATGAGTGGATGGATGCTGAAGAGAAAAAGGAAGAAGAAAAAGAAAAGGAGGACGAAGAAGAAGAGAAGCCAAAGCAAGGGAGCATTGAAGAAAATCAGGTAGAGGTGGTGGCAGAAGAGAAAGCAGCAGAAACCCAGGAGGAAACAGTAATGTCATTGAAAAATGGGCAAATCGGTACAGATGAGCCTAAGACAGAAGAGGAGAGGGAAAAAGGCTCAGATGAGATTCCCCATAATGAAAAGATGGAACAGGAAGCAAGGGAAAGAGCTGAGGCAGAAAGGGCCAGGTTGGAAGCAGAAGAAAGAGAAAGAATTAAAGCCGAGCAAGAACAAAAGATAGCAGAGGAGAAAGCAAGAAAGGAAGCAGAAGAAAAAGCAGCTGCACAAGAGAGAGAAAGACGGGAGGCAAAGGAGAGGGAAAGGATTAAGGAGGAGGAGAGAAGGGCAGCAGTGGAGAGGCAGAGGGCAAAGGCAGAGGAAGAAGAGAGAGCTAAGATAGAAGAGCAAAAACGTAAGAAGCAACTAGAAGAGAAAAAAAGGGAAATGCAAGAGAAAAAGATAAAAGGGGAAAAGGTAGAGGAGAAAACAGAAGGGAAGTGGGTCAATGAAAAGAAAGTACAAGAAGATAAACTTCAGACAGCTGTCCAAAAGAAACAGATCAAAGATGAGAAGACTAAAAAGGACAAAGAAAGCAAAGAAGTTAAGAGCTTCTTGGCTGGAAAGAAGGGATTTACAGAAATGAAGTCGCAGAATGGAGAATTCATGACCCACAAACTTAAACACGCTGAGAATACTATCAGCCGCCCTGGAGGGAGGGCCAGCGAGGCCAAGGAGGCTGAAGGTGCTTCCCAAGTGGAAGCCGGCAAGCGGCTGGAGGAGCTGCGCCGCCGCCGCGGGGAAACTGAAAGCGAGGAGTTCGAGAAGCTCAAGCAAAAGCAGCAGGAGGCAGCCTTGGAGCTGGAGGAGCTGAAGAAGAAGAGGGAGGAGCGAAGGAAGGTCCTGGAGGAGGAGGAGCAGAGGAGGAGGCAGGAGGAAGCAGAGCGAAAGGTCAGAGAGGAGGAAGAGAAGAGGAGGCTAAAGGAAGAGATTGAAAGGCGAAGGGCAGAAGCTGCTGAGAAACGCCAAAAGATGCCAGAAGATGGCTTATCAGACGACAAGAAGCCCTTCAAGTGTTTCACTCCTAAAGGGTCATCTCTCAAGATAGAAGAGCGAGCAGAATTTTTGAATAAGTCTGTGCAGAAAAGCAGTGGTGTTAAATCAACTCATCAAGCAGCAGTAGTCTCCAAGATTGACAGCAGACTGGAGCAATACACCAGTGCAATTGAGGGAACAAAAACTGCAAAACCTACGAAGCCAGCAGCCTCGGACCTTCCTGTTCCTGCCGAAGGTGTCCGCAACATCAAGAGCATGTGGGAGAAAGGCAATGTGTTCTCATCACCCACTGCATCAGGCACGCCAAATAAGGAAACAGCTGGCTTAAAGGTGGGGGTCTCCAGCCGCATCAATGAATGGCTAACCAAAACCCCAGATGGAAACAAGTCACCTGCTCCCAAACCTTCTGATTTGAGGCCAGGAGACGTATCTGGCAAGCGGAACCTCTGGGAAAAGCAATCTGTGGACAAGGTCACTTCCCCCACTAAGGTTTGA

Related Sequences

bmy_10398T0 Protein

Length: 587 aa      View alignments
>bmy_10398T0
MQNNTAENEMAEKEEKSESRQERYDIEETEIVTKSHQKNEWMDAEEKKEEEKEKEDEEEEKPKQGSIEENQVEVVAEEKAAETQEETVMSLKNGQIGTDEPKTEEEREKGSDEIPHNEKMEQEARERAEAERARLEAEERERIKAEQEQKIAEEKARKEAEEKAAAQERERREAKERERIKEEERRAAVERQRAKAEEEERAKIEEQKRKKQLEEKKREMQEKKIKGEKVEEKTEGKWVNEKKVQEDKLQTAVQKKQIKDEKTKKDKESKEVKSFLAGKKGFTEMKSQNGEFMTHKLKHAENTISRPGGRASEAKEAEGASQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRRQEEAERKVREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEERAEFLNKSVQKSSGVKSTHQAAVVSKIDSRLEQYTSAIEGTKTAKPTKPAASDLPVPAEGVRNIKSMWEKGNVFSSPTASGTPNKETAGLKVGVSSRINEWLTKTPDGNKSPAPKPSDLRPGDVSGKRNLWEKQSVDKVTSPTKV*