Sequence details bmy_10469 (Coding sequence)

Part of scaffold_537 (Scaffold)

For more information consult the page for scaffold_537 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NID1 ENSTTRG00000012133 (Bottlenosed dolphin)

Gene Details

nidogen 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011525, Bottlenosed dolphin)

Protein Percentage 80.54%
cDNA percentage 84.16%
Ka/Ks Ratio 0.46997 (Ka = 0.1326, Ks = 0.2822)

NID1 ENSBTAG00000007244 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000009531, Cow)

Protein Percentage 63.78%
cDNA percentage 69.37%
Ka/Ks Ratio 0.37235 (Ka = 0.3098, Ks = 0.8319)

NID1  (Minke Whale)

Gene Details

nidogen 1

External Links

Gene match (Identifier: BACU003379, Minke Whale)

Protein Percentage 83.24%
cDNA percentage 86.36%
Ka/Ks Ratio 0.46759 (Ka = 0.1235, Ks = 0.2641)

Additional orthologs identified in other species via the OPTIC pipeline.

NID1 (Human)  

Genome Location

Sequence Coding sequence

Length: 2799 bp    Location:684993..732664   Strand:+
Raw sequence 
>bmy_10469
ATGATGTTTGGTTTTGTACAGATTACCACAAACGGCATTATTGCCATGAGTGAGCCCCCAGCCAAAGAATCCCATCCTGGGCTATTCCCACCGACCTTCGGAGCAGTCGCCCCTTTCCTGGCGGACTTGGACACGACAGACGGCCTTGGGAAGGTTTACTATCGGGAAGACTTATCTCCCTCTGTCACTCAGCTGGCAGCGGAGTGTGTCCAGAGAGGGTTCCCGGAAGTCTCTTTCAAGCCCAGTAGCGTGGTGGTTGTCACTTGGGAATCCGTGGCTCCCTACCAAGGGCCCAGCAAGGACCCTGCCCAGGAAGGCAAGAGAAACACATTCCAGGCTGTTCTGGCCTCTTCTGATTCCAGCACCTACGCCATTTTCCTTTATCCTGAAGATGGTCTGCAGTTCTATACGACATTCTCAAAGAAGGATGAGAACCAAGTTCCTGCAGTGGTTGCTTTCAGCCAAGGTTTAGTAGGATTAATATGGAAGAGTGACGGAGCTTATAACGTATTTGCTAATGACAGAGAATCAATTGGAAACTTGGCCAAGAGCAGCAACTCTGGGCAGCAGGGCATCTGGGTGTTTGAGATTGGGAGTCCGGCAACGGCCAGTGGCGTGGTGCCCTCGGACGTGAACCTGGGATTGGACGACGGAGCAGAGTATGATGATGATTATGACTTGGTGACACCTCTGAGCCTGGAGGACACGGGCACCACATCCTTCCCCTATGAGGCCCGGAGAAGGGGAGACACTGGCACATACAACATGCCCAGTGACCTCTCCCCCCGCCGCCTGGCTACTGAGAGACCCCCTGGACCTCCCACGGAGAGGACCAGATCTTTCCAGCTGCCAGTGGAGAGGTTTCCCCAGCAGCAACCACAGGTCATAGACGTGGATGAAGTTGAGGAAACAGGAGTTGCAGTTTTCAGCTACAACACAGATTCCCGCCAGACGTGTGCCAACAACAGACACCAATGCTCCGTGCACGCAGAGTGCAGGGACTTTGCCACCGGCTTCTGTTGCAGCTGTGTTTCCGGCTACACGGGGAACGGCCGGCAATGTGTTGCAGAAGGTACCCCCCAGAGAGTTAACGGCAAGGTGAAAGGGAAGGTCTTTGTGGGGAACAGCCAAGTTCCCACTGTCTTTGAGAACACCGACCTCCACTCTTACGTGGTAATGAACCATGGGCGCTCCTACACAGCCATCAGCACCATTCCTGAGACCATCGGGTACTCTCTGCTTCCTCTGGCCCCTATTGGAGGCATCATTGGATGGATGTTTGCCGTGGAGCAAGATGGATTCAAGAATGGGTTCAGCATCACAGGGGGCGAATTCACCCGCCAGGCTGAGGTGACCTTTGTGGGGCACCCGGGCAAGTTGTTCATTAAGCAGCAGTTCAGCGGTATTGATGAGCATGGACACCTGACCATCGACACGGAGCTGGAGGGCCGAGTGCCGCAGATCACCTTCGGCTCCTCGGTGCACATCGAGCCCTACACGGAGCTCTACCACTACTCCCACCAGGTGATCACATCATCCTCTACCCGGGAGTACACAGTGACGGAACCTGAGCGGGATGGCGCTGCCCCTTCTCACGTCCACACTTACCAGTGGCGCCAGACCATCACCTTCCAGGAATGCGTCCACGACGACTCCCGGCCAGCCCTGCCCAGAACCCAGCAGCTCTCGGTGGACAGCGTGTTTGTCCTGTACAACCAGGAGGAGAGGATCTTGCGCTATGCTCTGAGCAACTCTATCGGTCCTGTGAGGGACGGCTCCCCTGATGCCCTTCAGAATCCTTGCTACATCGGCACTCATGGGTGTGACACCAATGCAGCCTGTCGCCCCGGCCCCGGGACCCAGTTCACCTGCGAGTGCTCCATCGGCTTCCGGGGAGACGGACAGACCTGCTACGGAACCTTCCGATGCGAGTGTGTAGAGGGTTACCGGTTTTCAGAGGAGGGAACATGTGTGGCTGTCGTGGACCAGCGCCCCATCAACTACTGTGAGGCTGGCCTTCATGACTGTGACATCTCTCAGCGGGCCCAGTGCATCTATTTGGGAGGCTCCTCCTACACCTGCTCCTGTCTGCCAGGCTTCTCTGGGGATGGCAGAGCCTGCCAAGATGTGGATGAATGCCAGCTGAGCCAATGTCACCCTGATGCCGTCTGCTACAACACTCCAGGGTCCTTCACGTGCCAGTGCAAACCTGGTTATCAGGGAGACGGCTTCCGTTGCATGCCTGGAGGTAAGGTGTCGGGGACGTTTGGAATCTCCAGGGTTGGCTTAGATTATTATGGAGAAATCTCGCTTACATTACGATTTCCTGGCTCTGCTCCCCTCCCCCGCTGGACCTTCTTTTTCCTTGTACGTGTCATCTTCATCCTCCTTAGTTTTGATTCCATTCCCAGCACTTTCTCCCCAGTAGGGGCTAGATCTTCCAGCTGCTGTTGGCTTTACATTCCACCTCGGAGTAGAAAAATCCCTCCAAAGTTTCAGCTGCCATTTTCAAATTGGCCTGCTTTCCAGCGGAATACAGTCACAGATGAACGCTGGAGTGCAGGACTTAAAATTCCAGCCGTTTACATTGTCTCATCACATTCTACTCATGCCTCAAATAATACCGTGGGATTAGTTACTCCTGCCATCGCTGGTCAACCAGCATTGCTGACAGGGCCAGAAGTGGTGGAACTGAGCATCAAAAACATTTTTCAGACACAAAATTCTGTGAAATATGTAATATATTATTATATACTCTATTATTACAATATATATATTATGAACACAGCAATATATTAA

Related Sequences

bmy_10469T0 Protein

Length: 933 aa      View alignments
>bmy_10469T0
MMFGFVQITTNGIIAMSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLGKVYYREDLSPSVTQLAAECVQRGFPEVSFKPSSVVVVTWESVAPYQGPSKDPAQEGKRNTFQAVLASSDSSTYAIFLYPEDGLQFYTTFSKKDENQVPAVVAFSQGLVGLIWKSDGAYNVFANDRESIGNLAKSSNSGQQGIWVFEIGSPATASGVVPSDVNLGLDDGAEYDDDYDLVTPLSLEDTGTTSFPYEARRRGDTGTYNMPSDLSPRRLATERPPGPPTERTRSFQLPVERFPQQQPQVIDVDEVEETGVAVFSYNTDSRQTCANNRHQCSVHAECRDFATGFCCSCVSGYTGNGRQCVAEGTPQRVNGKVKGKVFVGNSQVPTVFENTDLHSYVVMNHGRSYTAISTIPETIGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFVGHPGKLFIKQQFSGIDEHGHLTIDTELEGRVPQITFGSSVHIEPYTELYHYSHQVITSSSTREYTVTEPERDGAAPSHVHTYQWRQTITFQECVHDDSRPALPRTQQLSVDSVFVLYNQEERILRYALSNSIGPVRDGSPDALQNPCYIGTHGCDTNAACRPGPGTQFTCECSIGFRGDGQTCYGTFRCECVEGYRFSEEGTCVAVVDQRPINYCEAGLHDCDISQRAQCIYLGGSSYTCSCLPGFSGDGRACQDVDECQLSQCHPDAVCYNTPGSFTCQCKPGYQGDGFRCMPGGKVSGTFGISRVGLDYYGEISLTLRFPGSAPLPRWTFFFLVRVIFILLSFDSIPSTFSPVGARSSSCCWLYIPPRSRKIPPKFQLPFSNWPAFQRNTVTDERWSAGLKIPAVYIVSSHSTHASNNTVGLVTPAIAGQPALLTGPEVVELSIKNIFQTQNSVKYVIYYYILYYYNIYIMNTAIY*