Part of scaffold_542 (Scaffold)

For more information consult the page for scaffold_542 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TNIP1 ENSTTRG00000005761 (Bottlenosed dolphin)

Gene Details

TNFAIP3 interacting protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005449, Bottlenosed dolphin)

Protein Percentage 87.73%
cDNA percentage 88.87%
Ka/Ks Ratio 0.41065 (Ka = 0.0271, Ks = 0.066)

TNIP1 ENSBTAG00000012671 (Cow)

Gene Details

TNFAIP3-interacting protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016836, Cow)

Protein Percentage 89.6%
cDNA percentage 90.49%
Ka/Ks Ratio 0.2124 (Ka = 0.0594, Ks = 0.2798)

TNIP1  (Minke Whale)

Gene Details

TNFAIP3 interacting protein 1

External Links

Gene match (Identifier: BACU013100, Minke Whale)

Protein Percentage 93.25%
cDNA percentage 93.75%
Ka/Ks Ratio 0.34226 (Ka = 0.0489, Ks = 0.1428)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1665 bp    Location:141979..111424   Strand:-
>bmy_10533
ATGGAAGGGAGAGGACCATACCGGATCTACGACCCTGGGGGCGGCGTACCTCTGGGCGAGGCGTCCGCAGCTTTTGAGCGCCTAGTGGAGGAGAATTCCAGACTGAAGGAAAAAATGCAAGGGATAAAGATGTTAGGGGAGCTTTTGGAAGAGTCCCAGATGGAAGCGTCCAGGCTGCGGCAGAAGGCAGAGGAGCTGGTCAAGGACAGTGAGCTGCTCCCACCGCCGTCTCCCTCTTTGACCTCCTTCGACCACCTGGCTGAGCTCACAGGAAAGGATGCAGATGTCCCAGCAACCCCCGCTGACCCTGCACACCCCAGCGACAAGCCAGAGCCAAGCACCTCCTCTGAATTTGAGGTGGTCCCTGCCGAGGGGCATTCTTCACCAGAGAGCGGCGGCCACACCAGAAATACCATGGAGCTGGGTCCCCTGCCCCACGAGGACAGCAACCTGATGCTGCACCTGCAGCGCCTGGAGACCACCCTGAGCGTGTGCGCCGAGGAGCCTGACCACAGCCAGCTCTTCACGCACCTGGGCCGCATGGCCCTCGAGTTCAACCGGCTGGCTTCCAAGGTGCACAAGAATGAGCAGCGCACCTCCATCCTGCAGACCCTGTGTGAGCAGCTTCGGAAGGAGAATGAGGCCCTGAAGGCCAAGCTGGACAAGGGCCTGGAACAGCGGGATCAGGCTGCTGAGAGGCTCCGGCCAGATGCCCTTATTGCCCTGCCGGGGAAGAAGGCTGGTGTGACAGCAGGTAAAGTCCCAGAGGTGGGAGCCTTGGGTGCGGCTGAGAAGAAGGTGAGGATGCTGGAGCAGCAGCGCACGGAGCTGCTGGAAGTGAACAAGCAATGGGACCAGCATTTCCGGTCCATGAAGCAGCAGTATGAGCAGAAGACCGACAAGGAGCAGCTGACAGCAGAGGCCAAGGAGCTGCGCCAGAAGGTCAAATACCTGCAGGATCAGCTGAGCCCGCTCACCCGGCAGCGGGAGTACCAGGAGAAGGAGATTCAGCGGCTCAACAAGGCCCTGGAGGAAGCACTGAGTATCCAGGCCTCCCCATCATCTCCAGCAACAGCATTTGGGAGCCCGGAAGGAGCTGGAGGCCTGCTAAGGAAACAGGAGCTGGTCACTCAGAATGAATTGCTGAAACAGCAGGTGAAGATTTTTGAGGAGGACTTCCAGAGGGAGCGCAGCGACCGGGAGCGCATGAATGAGGAGAAGGAAGAGCTGAAGAAGCAGGTGGAGAAACTGCAAGCCCAGGTCACCCTGTCACATGCCCAGCTAAAAGCCTTCAAAGATGAGGAAAGGGCGAAAGATGCCCTGAGACAGCAGAAGAGGAAAGCAAAGACCTCGGCAGACCGCTACCACGTGGAGCCCCACCCGGAGCATCTCTTCGGGGCCTACCCCTACGCCTACCCGCCCATGCCCCCCGTTGTGCCGCACCGTGGCTTTGAGGACTGGTCCCAGGTCCGCTACCCGCCTCCCCCCACGGCCATGGAGCACCCACCCCCGCTTCCCAACTCGCGCCTCTTCCACCTGCCAGAATACACCTGGCGGCTGCCCTGTGGAGGGATACGCAGTCAGAGCTCCCAAGTGATGGGCTCACCCACGGCCAGGCCTACGGAACCAGAGTCCACCAAAAATGACCGTGAGGGACCTCAGTGA

Related Sequences

bmy_10533T0 Protein

Length: 555 aa      View alignments
>bmy_10533T0
MEGRGPYRIYDPGGGVPLGEASAAFERLVEENSRLKEKMQGIKMLGELLEESQMEASRLRQKAEELVKDSELLPPPSPSLTSFDHLAELTGKDADVPATPADPAHPSDKPEPSTSSEFEVVPAEGHSSPESGGHTRNTMELGPLPHEDSNLMLHLQRLETTLSVCAEEPDHSQLFTHLGRMALEFNRLASKVHKNEQRTSILQTLCEQLRKENEALKAKLDKGLEQRDQAAERLRPDALIALPGKKAGVTAGKVPEVGALGAAEKKVRMLEQQRTELLEVNKQWDQHFRSMKQQYEQKTDKEQLTAEAKELRQKVKYLQDQLSPLTRQREYQEKEIQRLNKALEEALSIQASPSSPATAFGSPEGAGGLLRKQELVTQNELLKQQVKIFEEDFQRERSDRERMNEEKEELKKQVEKLQAQVTLSHAQLKAFKDEERAKDALRQQKRKAKTSADRYHVEPHPEHLFGAYPYAYPPMPPVVPHRGFEDWSQVRYPPPPTAMEHPPPLPNSRLFHLPEYTWRLPCGGIRSQSSQVMGSPTARPTEPESTKNDREGPQ*