Sequence detailsbmy_10558 (Coding sequence)

Part of scaffold_555 (SequenceType object (1))

For more information consult the page for scaffold_555 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HPS1ENSBTAG00000014314 (Cow)

Gene Details

Hermansky-Pudlak syndrome 1 protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000019034, Cow)

Protein Percentage 75.63%
cDNA percentage 80.21%
Ka/Ks Ratio 0.24805 (Ka = 0.1662, Ks = 0.6699)

Additional orthologs identified in other species via the OPTIC pipeline.

HPS1 (Human)   Hps1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2328 bp    Location:915851..939500   Strand:+
Raw sequence 
>bmy_10558
ATGTGGCCACCGCCCGGCAGGAGTCAAAGCGCAGGAGTCAGTGCTCGCTGGGCCCGGCCGCCGAGCAGAAGCAAACCGAACGACAGGCAGAGGCTTAAGCCAGGCAGGGGCGGGGCGGGCTTCCAGTCCCTCCCCGGGCTGTCACGTGGGCGGTCAGGTGGCCACACCCGGAAGCACGCCCGCGGGATCCTGGCAGGCTGGGCGGTGTCTGGCTACTACGCGATGAAGTGCGTCTTGGTGGCCACAGAGGGCGCGGACGTCCTCTTCTACTGGACGGACGAGGAGTTTCAAGAGAGTCTGCGGCTGAAGTTTGGGCAGTCAGAGAATGAGGGAGAAGGGCTTCCCGCCCTGGAAGACCAGCTCAGCACCCTCCTGGCCCCAGTCATTATCTCCTCTATGACGATGCTGGAGAAGCTCTCAGACACATACACCTGCTTCTCGACGGAAAATGACAACTACCTGTACGTCCTTCACCTGTTCGGAGAATGCCTGTTCATCGCCATCAATGGAGACCACACAGAGGGCGAGGGGGACCTGCGGCAGAAGCTGTGCGTGCTCAAGTACCTTTTCGAGGTGCACTTCGGGCTGGTCACCATGGACGGCCAGCTCATCCGAAAGGAGCTGCGGCCCCCAGACCTGGAGCAGCGTGTGCAGGTGTGGGAGCACTTCCAGAGCCTGCTGTGGACCTACGGCCGCCTGCGGGAGCAGGAGCAGTGTTTCGCTGTGGAGCTATGTGAGCTGTGCATCGAGGTGCTGGAGCGGCACGTCGTCCAGGCCATCAACTCCAGCCCTGGGCGGGCCRGCGAGGAGGCCCTACACGCCTTCCTGCTCGTGCATTCCAAGCTGCTGGCTTTCTACTCCAGCCACAGCGCCGGCTCCCTGCGCCCAGCCGACCTCCTCGCCCTCATCCTTCTGGTGCAGGACCTCTACCCCAGCGAGAGCACGGCGGAGGACAACGACACCCAGGTCTCGGGGCAGCTCTCTGGGCAGCAGGAGGCCTTCAGGAAGGCGACTCAGAAAACCAGTCTGGAGAGTGCTGGGCAGGCTGCTGGGGAGACTGTGGTTTCCAAGTCACAGCCCTGGGCGTGTGGTAGCACAGTCTGGCTGGATGGGGGTACCCCTCCCACTGATGCTCCCCACGTCCAGATGGCTGAGGACACCCTCCACACGCTGGTCCCTCGCTCCCCAAGGCCCTCCAGCCCCAGAAGGATTTTCCTGGATGCCACCGTGAAAGAGAGCTACTGCCCCATGGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTCCTGACCAAGAGCCCCAGTACGGCCCTGGCCCTGGCCCTGTACCAGCTGCTGGATGGGTTTTCTCTACTGGAGAAGAAGCTGAAGGAGGGGCAGGAGGCCGGGAGTGCCCTGCGGTCCCACCCCCTCATGGGGGACCTACGCCAGAGGATGGACAAGTTTGTCAAGAATCGAGGTGGGCAAGAGCTTCAGGCTGCTCCAGGCATGCGGGAGGGTGAAGAGGCAGCTTTGCGCCATCTACCGGCTCAGCTTCCTGACCACGGCTCCGGGCCGGGGAGGCCCCTACCTGCCCCAGCACCTGCAGGACCAGGTCCAGACGCTCATGCAGTAAGTGTGGGTGTGGCCCCTCGGTGGCCAGGGCAGGAGCTGGGGTGCACCTGGCCCCAGCCCTGTTCCCCCTGCTTCCTCGGCAGAGAAAAGCTGGCAGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGGAATGTCACCATGGTGTCATATCCTGACTTCCCGGGCCTGGTGCATTTTATCTACGTGGACCGCACCACCGGCCAGATGGTGGCCCCTTCCCTCAGCAGCACTGAAAGGATGTCATCGGAGCTGGGCAGGGGGCCCCTGGCCACCTTCGTCAGAACCAAGGTCTGGTCTCTGATCCAGCTGGCGCGCAGATACCTGCAGAAGGGCTACACCACGCTGCTGTCCCGCGAGGGGGACTTCTACTGCTCCTACTTCCTGTGGTTCGAGAACGAGATGGTGGGTGTGGCCAGCCCGGGGCAGGGCAGTCCTGAAATGCTTTCTTTCCCTGTGACTCTTGGATCCCTTTCTTCTGGATTCTGTTCACTCTTCTTGTCCCTGCTGGAGCTGACAGCTAAGCCCAGCTGGAAGCTCCTGCGCTACTACAGCAAGAGCCACCCGGCTGAGGCTGTCAGGTGCCATGAGCTGCTGACCCTCCACCTGTCGGTCATCCCCACGGACGTGCTGGTGCAGCAGGCCGGCGAGCTGGCCCGGCGCCTGGGCGAGGCCTCCCGTGTCCCCCTGCTCTAG

Related Sequences

bmy_10558T0 SequenceType object (3)

Length: 776 aa      
>bmy_10558T0
MWPPPGRSQSAGVSARWARPPSRSKPNDRQRLKPGRGGAGFQSLPGLSRGRSGGHTRKHARGILAGWAVSGYYAMKCVLVATEGADVLFYWTDEEFQESLRLKFGQSENEGEGLPALEDQLSTLLAPVIISSMTMLEKLSDTYTCFSTENDNYLYVLHLFGECLFIAINGDHTEGEGDLRQKLCVLKYLFEVHFGLVTMDGQLIRKELRPPDLEQRVQVWEHFQSLLWTYGRLREQEQCFAVELCELCIEVLERHVVQAINSSPGRAXEEALHAFLLVHSKLLAFYSSHSAGSLRPADLLALILLVQDLYPSESTAEDNDTQVSGQLSGQQEAFRKATQKTSLESAGQAAGETVVSKSQPWACGSTVWLDGGTPPTDAPHVQMAEDTLHTLVPRSPRPSSPRRIFLDATVKESYCPMVPHTMYCLPLWPGINMVLLTKSPSTALALALYQLLDGFSLLEKKLKEGQEAGSALRSHPLMGDLRQRMDKFVKNRGGQELQAAPGMREGEEAALRHLPAQLPDHGSGPGRPLPAPAPAGPGPDAHAVSVGVAPRWPGQELGCTWPQPCSPCFLGREKLADWKDFLLVKSRRNVTMVSYPDFPGLVHFIYVDRTTGQMVAPSLSSTERMSSELGRGPLATFVRTKVWSLIQLARRYLQKGYTTLLSREGDFYCSYFLWFENEMVGVASPGQGSPEMLSFPVTLGSLSSGFCSLFLSLLELTAKPSWKLLRYYSKSHPAEAVRCHELLTLHLSVIPTDVLVQQAGELARRLGEASRVPLL*