Part of scaffold_568 (Scaffold)

For more information consult the page for scaffold_568 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SYCP2 ENSTTRG00000011330 (Bottlenosed dolphin)

Gene Details

synaptonemal complex protein 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010753, Bottlenosed dolphin)

Protein Percentage 76.01%
cDNA percentage 80.68%
Ka/Ks Ratio 0.86694 (Ka = 0.0695, Ks = 0.0801)

SYCP2 ENSBTAG00000003608 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000004704, Cow)

Protein Percentage 82.96%
cDNA percentage 90.35%
Ka/Ks Ratio 0.5168 (Ka = 0.0895, Ks = 0.1731)

SYCP2  (Minke Whale)

Gene Details

synaptonemal complex protein 2

External Links

Gene match (Identifier: BACU011274, Minke Whale)

Protein Percentage 83.23%
cDNA percentage 88.52%
Ka/Ks Ratio 0.62519 (Ka = 0.1173, Ks = 0.1875)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4140 bp    Location:954321..896726   Strand:-
>bmy_10628
ATGCCAGTAAGACCAGATCTCCAGCAGTTGGAAAAATGCATTGATGATGCTTTAAGAAAAAATGATTTCAAACCTTTGAAAACACTTTTACAAATTGATATTTGTGAAGATATGAAGATTAAATGCAGCAAACAGTTTTTCCACAAGTTGGATAACCTTATGTGCAGGGTTTACTGTTTGTATGAGTACATTCTTAAAATTATTAAAATTGAATTCAAAGTCATACATGACATCGATGATGAAGGTAAAAGGCAAGTAGTGGAAAGTTTCATACCTCGAATTTGTGCCCTGGTTATTGACTCAAGAGTGAATATTTGTATTCAGCAGGAGACTCTAAAAATAATGAATGCTATGCTGGACAAAATGCCTCAAGATGCCAGGAAAATACTCTCTAACCAAGAAATGTTAATTCTCATGAGTAGTATGGGAGAAAGGATTTTAGATGCTGGAGATTATGACTTACAAGTGGCTATCATAGAAGCTTTATGCAGAATGACCACACAAAAACAAAGACAAGAACTGGCATGTCAGTGGTTTTCAATGGATTTTATTGCTAATGCATTTAAAGGAATTAAAGACTCTGAATTTGAAACAGATTGCAGGATATTTCTCAACCTTGTAAATGGCATGCTTGGAGACAAAAGAAGGGTCTTTACATTTCCTTGTTTATCAGCATTTCTTGATAAATATGAGTTGCAAATACCATCAGATGAAAAACTTGAGGGATTTTGGATAGATTTTAATCTTGGGAGCCAGACTGTATCATTCTACGTTGCTGGAGACAATGATAATCATCAGTGGGAAGCAGTCACTGTGCCTGAGGAAGAAGTACAAATATACAGCATTGAAGTGAGAGAATCGAAGAAGCTACTGACTATAACTCTGAAAAATAAAGTAAAAGTTAGTGAAAGAGAAGGGAAGGAATTGCTTTTGTATTTTGATGCATCCTTAGAAATCACTAACGTGACACAAAAAATTTTTGGTGCAAATAAGTATAGGGAATTTACCAGAAAACAAGGCATTTCAGTTGCCAAAACATCTGTGCATATTCTTTTTGATGCAAGTGGATCACAGATTCTAGTCCCAGAAAGTCAAATCTCACCAGTCGAAGAAGAACTTGTTAGTTTGAAAGAAAAAGCTAACCCCCAAGAGGAATTTGCTAAACCTCCAAAATATATCAAAAACAGTAATCAAGGGGACAGAAAAAATAGTCAGCCTGAGATAATTACTCCTAGCAAAAGAAAAATGTCTGAAGCATCAATGATTGTTCCTGGCGCAGATAGATACACTGTGAGAAGTCCAATACTTTTAGTCAATACATCAACACCACGAAGAAGAAGAATTAAACCACCACTGCAAATGATGAGTTCTACAGAAAAACCTGGTGCTTCTAAAACATTGGAAAATGGAGTGGATAATGCTGTATCGCTTAAATCTAGACCATCTGAAGAAAGAAATAGAGGAGATAATACAGACAAACATATCGAAACTGCTAAAGTTATAGAAAAGACAGAAAATAAGGACATTGAATTCCCAAACCAAAATTTTAGTGAACTCCAGGAAATTGTTCCTGATTCACATGCAGTGGGAAAAATAGATAAACCTGTGTCACCTGGTGTTTTAGACAACATCTGTGGAAATAAAATGCACTCCAAATGGGCATGTTGGACACCTGTAACAAATATTAATCTGTGTAATAACCAAAGAGCAAGTACTTCATCAGGAGACACATTTAATCAAGATATTGTTATCAACAAAAAACTTACTAAACAAAAATCATCCTCTTCAATATCTGATGATAATTCTCAGGAAATGGGAAAGGTGCAGTATGGGAAAGAAATAATGCAGCATAACAAAATACATAAAGCAGAAGTAGAAGTTTGCAAAAGAAACAAACAACAACAACTGAATCATTCTAAACATTTGGAGGAGAAAAATATTGAAAATACAAAGCAGAGTGATTGGCATATTGAATCTGAAACTACTTTTAAATCAGTTCTCCTAAATAAGACAGTTGAAGAATCTGTGGTCTGTAGGAAGAAATACACACTGTCAAAAGATGTGAATACTGCTATCTGTGATAAAAGCCCTTCTCCTAGAAAAAATGCAAAAAGTCATAGAAAATCAGGGAAAAGATTGACATCTGAATTTAATTCCTGGRATTTGAAACAAAAAAAAATGAGAGAAGAGTCAAAAGGGAAAGGATTTAGTGATGCAGCAGAATCTTTGATAAGCCAAATTAATAAGAGATACAAACCAAAGGATGGCATAAAGTCTACAAGAAAATTAAAGGAGTCTTTGATTGACAGTGGTTTTTCAAACAAATCTGATCTACAGCTCAGTAAGGAAAAGGTTCAGAAAAAAAGTTATAGACAGTTGAAGACTACTTTTGTTAATGTTACTTCTGAATGCCCATTGAATGATGTTTACAATTTTAATTTGAATGGAGCTGATGAGCCTATTATAAAACTTGGAACTGTAACTAATCATAAAAAGAAAAATCTCTTTAGTGATACTGACACAGAATACAGATGTGATGACAGCAAGACCGATATTAGCTGGCTAAGAGAACCAAAATCAAAACCACAGCTAATAGACTACAGCAGAAATAAAAATGTGAAGAAACATAAAAGTGGGAAATCAAGACCATCTTTGGAAAGGGGACAGCCAAGATCTAAAATGGTATTTTTGATATCGTTTCCTTTCTCTCTCTCTTACTTTAGTTACACACCCAACAAAAACATCACCAAAAAGGTAGATGAGACAGTTCCAGATGGGAGAACGAGACTTCCACGACGAGCCGCAGAAACCAAAAAAAATTATAAAGATCTCTCAAATTCAGAATCAGAGAGTGAACAAGAATTTTCACATTCCTTTAAAGAGAAAGTGCTAGTAAAGGAGGAGAAGATCCATTCCAGACGCAAAACCATGAAACTGCCAAAGAAACAGCAGAATTCCTTCACTGCCGAAACACAAGAGGATGTATCAAAAGAATGGAAAAACTCATCTCTACTGAAAGATACTATAAGAGATAATAGCCTTGATCTATCTCCTGTAACTTTATCTGGGAGTCCATCATCTATAGAAGTAATGAGATACGTCAGTATAGAGAAAGTAACAGAAAGGGATTTTACTCAGGATTATGGCTGTATAACAAAACCAGTATCACCTTGTCCAAAAATTTCATCACCTGAATCCTTAAACAGTGGAGTTGGAAGTCCAATAAAGTCACCCAAGAACAGTGAGAAGAATTTACTACGTACAAGAGAAAGTTGCTCACCAATTCCACGATCATTCTTTTTGGAAAGTCATTCAGCATCTCCATTATCCATGTCTAGTGAAGGAAGAGAGAAAATATGGTGTGGCATGTCCGATGACTCCACTCATGTATCAGGCCCTACACAACATCTTAGTCGCAAACGAATGTACATAGAAGACAATCTAAGTAATCCTGGTGAAGCAGAATTGGAAGAAGAAGAAGAAGAAGAAAGAGCAAACTTGCTTCCCAAGAAACTGTCTAAAGGAGAAGGTGCAGATCATCACACTTGCAAAGTGTCTGAAAGTATATCTCCATTATCAACAAATGACTTTTCTATTCCTGGGGAGAACTGGGAAACTGAAATTTCAGGTGTAGGGACGATGTGTGAGGAGCTCAATACAGAATTTAGGAGGAAAGTTCATATCCGCCACAAAATGATGGATTATTTTACTAAGCAGTCTTGGAAAACGGCTCAACAACATGTAAAAACAATGAACCATCAGATTCAGGAGATCAAAAAACTTGACAAATTCCAATTCATCATCATAGAGGAGCTGGAGAATTTTGAAAAAGATTCACAGTCTTTAAAAGATTTGGAGAAGGAATTTGTGGGCTTTTGGGAAAAGGTGTTTCAGAAGTTCAGTGCCTATCAAAAAAGTGAACAGCAGAGACTTCACCTTTTAAAAGCTTCATTGGAAAAGAATGTCTTCTACAACACTGATTATGAAGAAACTATTTTTACATCTGAGATGTGTTTGATGAAAGAAAACATGAAAATGCTGCAAGACAGACTTCTTAAGGAAATGCAAGAAGAGGAGCTTCTTAATGTACGCAGAGGATTGATGTCATTATTCATGGCTCATGAAAGAAACAATGTGTGA

Related Sequences

bmy_10628T0 Protein

Length: 1380 aa      View alignments
>bmy_10628T0
MPVRPDLQQLEKCIDDALRKNDFKPLKTLLQIDICEDMKIKCSKQFFHKLDNLMCRVYCLYEYILKIIKIEFKVIHDIDDEGKRQVVESFIPRICALVIDSRVNICIQQETLKIMNAMLDKMPQDARKILSNQEMLILMSSMGERILDAGDYDLQVAIIEALCRMTTQKQRQELACQWFSMDFIANAFKGIKDSEFETDCRIFLNLVNGMLGDKRRVFTFPCLSAFLDKYELQIPSDEKLEGFWIDFNLGSQTVSFYVAGDNDNHQWEAVTVPEEEVQIYSIEVRESKKLLTITLKNKVKVSEREGKELLLYFDASLEITNVTQKIFGANKYREFTRKQGISVAKTSVHILFDASGSQILVPESQISPVEEELVSLKEKANPQEEFAKPPKYIKNSNQGDRKNSQPEIITPSKRKMSEASMIVPGADRYTVRSPILLVNTSTPRRRRIKPPLQMMSSTEKPGASKTLENGVDNAVSLKSRPSEERNRGDNTDKHIETAKVIEKTENKDIEFPNQNFSELQEIVPDSHAVGKIDKPVSPGVLDNICGNKMHSKWACWTPVTNINLCNNQRASTSSGDTFNQDIVINKKLTKQKSSSSISDDNSQEMGKVQYGKEIMQHNKIHKAEVEVCKRNKQQQLNHSKHLEEKNIENTKQSDWHIESETTFKSVLLNKTVEESVVCRKKYTLSKDVNTAICDKSPSPRKNAKSHRKSGKRLTSEFNSWBLKQKKMREESKGKGFSDAAESLISQINKRYKPKDGIKSTRKLKESLIDSGFSNKSDLQLSKEKVQKKSYRQLKTTFVNVTSECPLNDVYNFNLNGADEPIIKLGTVTNHKKKNLFSDTDTEYRCDDSKTDISWLREPKSKPQLIDYSRNKNVKKHKSGKSRPSLERGQPRSKMVFLISFPFSLSYFSYTPNKNITKKVDETVPDGRTRLPRRAAETKKNYKDLSNSESESEQEFSHSFKEKVLVKEEKIHSRRKTMKLPKKQQNSFTAETQEDVSKEWKNSSLLKDTIRDNSLDLSPVTLSGSPSSIEVMRYVSIEKVTERDFTQDYGCITKPVSPCPKISSPESLNSGVGSPIKSPKNSEKNLLRTRESCSPIPRSFFLESHSASPLSMSSEGREKIWCGMSDDSTHVSGPTQHLSRKRMYIEDNLSNPGEAELEEEEEEERANLLPKKLSKGEGADHHTCKVSESISPLSTNDFSIPGENWETEISGVGTMCEELNTEFRRKVHIRHKMMDYFTKQSWKTAQQHVKTMNHQIQEIKKLDKFQFIIIEELENFEKDSQSLKDLEKEFVGFWEKVFQKFSAYQKSEQQRLHLLKASLEKNVFYNTDYEETIFTSEMCLMKENMKMLQDRLLKEMQEEELLNVRRGLMSLFMAHERNNV*