Part of scaffold_571 (Scaffold)

For more information consult the page for scaffold_571 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USO1 ENSTTRG00000001891 (Bottlenosed dolphin)

Gene Details

USO1 vesicle transport factor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001773, Bottlenosed dolphin)

Protein Percentage 81.02%
cDNA percentage 81.43%
Ka/Ks Ratio 0.404 (Ka = 0.0592, Ks = 0.1466)

USO1 ENSBTAG00000017028 (Cow)

Gene Details

General vesicular transport factor p115

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022642, Cow)

Protein Percentage 98.4%
cDNA percentage 95.27%
Ka/Ks Ratio 0.04943 (Ka = 0.0092, Ks = 0.1855)

USO1  (Minke Whale)

Gene Details

USO1 vesicle transport factor

External Links

Gene match (Identifier: BACU000795, Minke Whale)

Protein Percentage 78.3%
cDNA percentage 81.53%
Ka/Ks Ratio 0.5798 (Ka = 0.1901, Ks = 0.3279)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1560 bp    Location:180918..90669   Strand:-
>bmy_10635
ATGAATTTCCTCCGCGGGGTTATGGGGGGTCAGAGTGCCGGACCCCAGCACACAGAAGCCGAGACGATTCAAAAGCTTTGTGATAGAGTAGCTTCATCTACTTTACTGGATGATCGAAGAAATGCTGTGCGTGCTCTCAAATCATTATCTAAGAAATATCGCTTGGAAGTGGGTATTCAAGCTATGGAACATCTTATCCATGTTTTACAAACAGATCGTTCGGATTCTGAAATAATAGGTTATGCTTTGGACACACTATATAATATAATATCTAATGATGAAGAAGAAGAAGTAGCATCATATTCAAATACTTTATCTTTGAATATTACAGAAGAAAACTCCACAAGACAGAGTGAGGATTTGGGAAGCCAGTTTACAGAAATTTTCATTAAGCAGCAAGAAAATGTCACTCTTCTGTTATCTTTATTAGAGGAGTTTGATTTCCACGTCCGCTGGCCTGGTGTGAAGCTTCTTACTTCTCTTTTAAAACAACTAGGGCCTCAAGTGCAGCAAATTATTTTAGTCAGTCCTATGGGTGTTTCAAGGTTGATGGACTTGTTAGCAGATTCCAGGGAAGTTATACGTAATGATGGCGTCTTACTACTACAGGCACTAACAAGAAGCAATGGAGCAATCCAGAAAATTGTTGCTTTTGAAAATGCTTTTGAGAGACTACTGGACATTATTACCGAGGAGGGGAACAGTGATGGAGGTATAGTAGTGGAAGATTGTCTGATTTTGCTTCAAAACCTGTTAAAAAACAACAATTCCAATCAAAATTTTTTTAAAGAAGGCTCATATATTCAGCGTATGAAACCTTGGTTTGAAGTTGGAGATGAAAATTCAGGCTGGTCCGCACAGAAAGTGACTAATCTGCACCTAATGCTACAGCTTGTTCGTGTACTGGTTTCTCCAAACAACCCTCCCGGTGCTACCAGTAGCTGCCAAAAAGCTATGTTCCAGTGTGGCTTACTGCAGCAGCTTTGCACTATCTTAATGGCCACTGGAGTTCCTGCTGATATCCTGACTGAGACCATTAATACTGTATCAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTTGCTTCTGTAAATGCACCTTCAAACCCACCAAGACCAGCCATTGTAGTACTTCTTATGTCCATGGTTAATGAAAGGCAGCCATTTGTATTGCGCTGTGCTGTTCTCTACTCAACAGGTAATTCAGTCTCAGCTGGTCAGTTGTTATGCGGAGGTTTATTTTCTACTGATTCACTTTCAAACTGGTGTGCTGCTGTGGCCCTTGCCCATGCTTTGCAAGAAAATGCTACCCAGAAAGAACAATTGCTCAGGGTTCAACTTGCTACAAGTATTGGCAACCCTCCAGTTTCTTTATTGCAACAGTGCACCAACATCCTTTCACAGGGTGATAAGATCGACCGACGGGGAAGCAAAATACAGACAAGAGTTGGATTACTAATGTTGCTTTGTACCTGGCTTAGCAACTGCCCCATTGCAGTAACACATTTTCTTCACAATTCAGCCAATGTTCCCTTTGTATCCTTTATGTTTTAA

Related Sequences

bmy_10635T0 Protein

Length: 520 aa      View alignments
>bmy_10635T0
MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVASYSNTLSLNITEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYSTGNSVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGDKIDRRGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFVSFMF*