Sequence details bmy_10664 (Coding sequence)

Part of scaffold_558 (Scaffold)

For more information consult the page for scaffold_558 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

XRN1 ENSTTRG00000012914 (Bottlenosed dolphin)

Gene Details

5'-3' exoribonuclease 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012255, Bottlenosed dolphin)

Protein Percentage 96.0%
cDNA percentage 96.0%
Ka/Ks Ratio 0.1236 (Ka = 0.0046, Ks = 0.0374)

XRN1 ENSBTAG00000011524 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015318, Cow)

Protein Percentage 96.29%
cDNA percentage 96.32%
Ka/Ks Ratio 0.1792 (Ka = 0.0187, Ks = 0.1041)

XRN1  (Minke Whale)

Gene Details

5'-3' exoribonuclease 1

External Links

Gene match (Identifier: BACU012767, Minke Whale)

Protein Percentage 98.7%
cDNA percentage 98.89%
Ka/Ks Ratio 0.27879 (Ka = 0.0071, Ks = 0.0255)

Additional orthologs identified in other species via the OPTIC pipeline.

XRN1 (Human)   Xrn1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3234 bp    Location:667931..604336   Strand:-
Raw sequence 
>bmy_10664
ATGGGAGTCCCCAAGTTTTACCGATGGATCTCGGAGCGGTATCCCTGCCTCAGCGAAGTGGTGAAGGAGCATCAGATTCCTGAATTTGATAACTTATACCTGGATATGAATGGAATTATACATCATTGTTCCCATCCTAATGATGATGATGTTCACTTCAGAATTTCAGATGATAAAATCTTTACTGATATTTTTCACTACTTGGAGGTGTTGTTTCGCATTATTAAACCTAGGAAAGTGTTCTTCATGGCCGTTGATGGTGTGGCTCCTCGAGCAAAGATGAACCAGCAGCGTGGGAGGCGTTTTAGGTCAGCAAAGGAGGCAGAAGACAAAATTAAAAAGGCAGTAGAAAAAGGAGAAACTCTTCCTACAGAGGCCAGATTTGATTCCAACTGCATTACACCAGGGACTGAATTCATGGCCAGGTTACACGAACATCTGAAGTATTTTGTAAATAYGAAAATTTCTACAGACAAGTCGTGGCAAGGAGTTACCATCTACTTCTCAGGCCATGAGACTCCTGGAGAAGGAGAACATAAAATCATGGAATTTATCAGATCCGAGAAGGCAAAGCCAGATCATGATCCAAACACCAGACACTGTCTTTATGGCTTAGATGCTGACTTGATTATGCTTGGATTAACAAGTCATGAGACACATTTCTCTCTTTTAAGAGAAGAGGTTCGGTTTGGTGGCAAAAAGACACAAAGGGTATGCGCACCAGAAGAAACCACATTTCACCTTCTACACTTGTCTTTAATGAGAGAGTATATTGACTATGAGTTTTCAGCATTAAAAGACAAGATCACATTTAAATATGATATTGAAAGGATAATAGATGATTGGATTTTGATGGGATTTCTTGTTGGCAATGATTTTATCCCTCATCTACCTCATTTACATATTAATCATGATGCACTGCCTCTTCTTTATGGAACATATATTACCATCCTGCCAGAACTTGGGGGTTATATTAATGAAACTGGGCATCTCAACTTACCTCGATTTGAGAAATACCTTGTGAAACTATCAGATTTTGATCGAGAGCACTTCAGTGAAGTTTTTGTGGACCTAAAGTGGTTTGAAAGCAAAGTTGGTAACAAGTACCTCAATGAAGCAGCAGGTGTCGCAGCAGAAGAAGCCAAGAACTACAAGGAAAAGAAAAAATCAAAGGGCCAGGAAAACTCCGTATGTTGGGCTGCTTTAGACAAAAATGGAGAAGAAGTGGTAACTTCTAAGGACAATTTAGAAGATGAGACTGAAGATGATGACTTGTTTGAAACCGAGTTTAGACAATATAAAAGAACATATTACATGACAAAGATGGGAGTTGACGTAGTTTCTGATGACTTTCTGGCTGATCAAGCTGCATGTTATGTTCAGGCAATACAGTGGATTTTGCACTATTACTATCATGGAGTTCAGTCCTGGAGCTGGTTTTATCCGTACCATTATGCACCTTTCCTATCTGATATTCGCAACATCAGTACACTCAAAATCCATTTTGAACTAGGAAAACCTTTTAAGCCATTTGAACAGCTTCTTGCTGTACTTCCAGCAGCTAGCAAAAATTTACTTCCTACATGCTACCAGCATTTGATGACCAATGAAGACTCGCCAATTATAGAATATTATCCACCTGATTTTAAAACTGACCTAAATGGGAAGCAACAGGAATGGGAAGCTGTGGTTCTAATACCTTTTATTGATGAGAAGCGATTGTTGGAAGCCATGGAGACATGCAGCCACTCCCTCAAAAAAGAAGAGAGGAAAAGAAACCAACATAGTGAGTGCCTAATGTGCTGGTATGATAGCGAGACAGAGTTCACATACCCCTCTCCGTGGCCAGAAAAGTTCCCTGCCATAGGACGATGCTGCGCAAGGTATAAAATAATATCATTAGATGCTTGGCGTGTAGACATAAGCAAAAACAAAATAACCAGGGTTGACCAGAAGGCATTATATTTCTGTGGATTTCCTACTTTGAAACACATCAAACACAAATTTTTTTTGAAGAAAAGTGGGGTTCAAGTATTCCAGCAAAGCAGTCGTGGAGAAAACATGATGTTGGAAATCTTAGTGAATGCAGAATCAGATGAACTTAGTGTAGAAAATATAGCTTCATCAGTGCTTGGGAAGTCTCTCTTTGTTAATTGGCCTCATCTTGAAGAAGCTAGAGTTGTTGGTGTATCAGATGGAGAAACTAAGTTTTACTTGGAAGAACCTGCAGGAACACAGAAGCTTTATTTGGGAAGAACTGCACCACCCTCTAAAGTGGTCCATCTTGGAGACAAAGAACAATCTAACTGGACAAAAGAAGTACAAGGAATTTCAGAATACTACCTGAGAAGAAAAGGAATAATAATAAATGAAACATCTGCAGTTGTATACGGTCAGTTACTCACAGGTCGTAAATATCAAATAAATCAAAATGGTGAAGTCCGTCTAGAGAAACAGTGGTCAAAACAAGTTCTTCCATTTGTTTATCAAACTATTGTCCAAGACATCCGAGCTTTTGACTCCCGTTTCTCCAATATTAAAACATTGGATGACTTGTTTCCTCCTAGAAGTATGGTCTTTATGCTGGGAACACCCTATTATGGATGCACTGGAGAAGTTCAGGATTCAAGGGATGTGATTACAGAAGGCAGGATTCGTGTGGTTTTCAGTATTCCATGTGAACCCAATCTTGATGCTTTAATACAAAACCAGCATAAATATTCTATAAAGTACAACCCAGGATATGTGTTGGCCAGTCGCCTTGGAGTGAGTGGATACCTTGTTTCAAGGTTTACAGGAAGTATTTTTATTGGAAGAGGATCTAGGAGAAACCCTCATGGAGACCATAAAGCAAATGTGGGTTTGAATCTCAAATTCAACAAAAAAAATGAGGAGGTACCTGGATATACTAAGAAAGTTGGAAGTGAATGGATGTATTCATCTGCAGCAGAACAACTTCTTGCAGAGTACTTGGAGAGAGCTCCAGAACTATTTAGTTATATAGCCAAAAACAGCCAAGAGGATGTGTTCTATGAAGACGACATTTGGCCTGGAGAAAATGAGAATGGTGCTGAGAAAGTTCAAGAAATTATTACTTGGCTAAAGGGACATCCTGTCAGTACTTTGTCTCGTTCTTCTTGTGATTTACAAATTCTGGATGCAGCTATTGTTGAGAAAATTGAAGAAGAAGTTGAAAAGTGCAAGGTACTAATTTTCAATAACGAAGATTATTGA

Related Sequences

bmy_10664T0 Protein

Length: 1078 aa      View alignments
>bmy_10664T0
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHHCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAVEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNXKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYITILPELGGYINETGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEAKNYKEKKKSKGQENSVCWAALDKNGEEVVTSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWFYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCSHSLKKEERKRNQHSECLMCWYDSETEFTYPSPWPEKFPAIGRCCARYKIISLDAWRVDISKNKITRVDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSVENIASSVLGKSLFVNWPHLEEARVVGVSDGETKFYLEEPAGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISEYYLRRKGIIINETSAVVYGQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVQDIRAFDSRFSNIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSRDVITEGRIRVVFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKVLIFNNEDY*