Part of scaffold_558 (Scaffold)

For more information consult the page for scaffold_558 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PLS1 ENSTTRG00000010032 (Bottlenosed dolphin)

Gene Details

plastin 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009515, Bottlenosed dolphin)

Protein Percentage 89.43%
cDNA percentage 89.93%
Ka/Ks Ratio 0.28185 (Ka = 0.009, Ks = 0.0321)

PLS1 ENSBTAG00000023429 (Cow)

Gene Details

Plastin-1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053019, Cow)

Protein Percentage 96.82%
cDNA percentage 95.42%
Ka/Ks Ratio 0.10228 (Ka = 0.0155, Ks = 0.1517)

PLS1  (Minke Whale)

Gene Details

plastin 1

External Links

Gene match (Identifier: BACU012769, Minke Whale)

Protein Percentage 98.27%
cDNA percentage 98.9%
Ka/Ks Ratio 0.74786 (Ka = 0.0098, Ks = 0.0131)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1851 bp    Location:831671..879853   Strand:+
>bmy_10666
ATGGAGAACAGCACCACCACCATTTCTCGGGAGGAGCTGGAAGAACTACAAGAAGCATTTAATAAAATAGATATTGACAACAGTGGGTATGTCAGTGACTATGAACTCCAGGACCTGTTTAAGGAAGCAAGCCTCCCTCTGCCTGGCTACAAGGTTCGWGAAATCGTGGAGAAAATTCTAGCAGTTGCTGACAACAACAAAGATGGCAAAATCAGCTTCGAAGAGTTTGTGTCRGTAAGTAATCTAAATCCTCTCCTGRCTACTGATTGTTTTGYTTCAAGCAGARTTTCACTAATGCAAGAGTTAAAAAGCAAAGACATCAGCAAAACATTCAGAAAAATAATTAACAAGAGAGAAGGGATTACTGCTATTGGAGGAACTTCATCCCTTTCCAGTGAGGGCACACAGCATTCTTATTCAGAGGAAGAAAAAGTGGCTTTTGTTAACTGGATAAACAAAGCCCTGGAGAATGACGCTGACTGTAAGCATCTCATACCTATGAATCCCAATGACGGCAGTCTTTTCAAATCACTTGCCGATGGCATCCTTCTTTGTAAAATGATCAACTTATCTGAACCAGATACAATTGATGAAAGAGCCATTAATAAGAAGAAGCTCACCCCTTTTACTATTTCTGAAAATTTAAACCTAGCCCTGAATTCTGCCTCAGCCATTGGTTGTACAGTGGTCAACATTGGTGCACAGGATCTCAAAGAAGGAAAACCTCACTTGGTCTTGGGACTTCTCTGGCAGATCATCAAAGTTGGTCTTTTTGCTGATATTGAGATTTCCAGGAATGAAGCCCTGATTGCATTGCTAAACGAAGGTGAGGATCTAGAAGAGTTGATGAAGCTTTCTCCAGAGGAATTACTGCTGCGTTGGGTGAACTACCATCTGACCAATGCAGGATGGCGTACCATCAGCAACTTCAGCCAGGACATTAAGGAGGGAAATGACTTGAAGCGTGCTGAATTCATGCTTCGGGAAGCAGATAAACTGGGCTGCAGACAGTTTGTTACTCCTGCAGATGTGGTTTCAGGCAATCCTAAACTTAATTTAGCTTTTGTAGCTAACCTGTTTAACACATACCCAAGCCTACAGAAGCCTGATAATGACATCGATATGAATTTATTGGAAGGAGAAAGCAAGGAAGAGAGGACATTTCGGAACTGGATGAATTCCTTGGGAGTCAACCCATACGTTAATCATTTGTACAGTGACCTTGCAGATGCTTTAGTCATCTTTCAGCTCTACGAAATGATCCGCGTGCCAGTCGATTGGAGCCATGTCAACAAACCTCCGTATCCTGCTCTTGGAGGGAACATGAAGAAGATCGAAAACTGTAACTATGCAGTGAAACTTGGGAAGAATAAGGCCAAATTCTCCTTGGTTGGCATTGCTGGGCAGGACTTAAATGAAGGGAATTCCACACTTACTCTGGCACTGGTGTGGCAGCTGATGAGAAGGTACACGTTGAATGTGTTATCGGATCTTGGAGAGGGTGAAAAAGTAAATGATGCAATTATCATTGAATGGGTCAATCAGACTCTTAAAAGTGCAAACAAAAATACTTTTATTTCCAGCTTCAAGGACAAATCTATTAGCACTAGTTTACCTGTCTTGGATTTAATAGATGCCATTGCACCAAATGCAGTTCGTCAAGAAATGATCAAGAGAGACGACCTTTCTGATGAGGACAAGCTGAACAATGCTAAATACGCCATTTCAGTTGCTCGAAAGATCGGTGCCCGGATATATGCCTTACCTGATGACCTTGTGGAAGTGAAACCCAAGATGGTTATGACAGTGTTTGCATGCTTAATGGGAAAAGGACTGAACAAAATAAAATAA

Related Sequences

bmy_10666T0 Protein

Length: 617 aa      View alignments
>bmy_10666T0
MENSTTTISREELEELQEAFNKIDIDNSGYVSDYELQDLFKEASLPLPGYKVREIVEKILAVADNNKDGKISFEEFVSVSNLNPLLXTDCFXSSRXSLMQELKSKDISKTFRKIINKREGITAIGGTSSLSSEGTQHSYSEEEKVAFVNWINKALENDADCKHLIPMNPNDGSLFKSLADGILLCKMINLSEPDTIDERAINKKKLTPFTISENLNLALNSASAIGCTVVNIGAQDLKEGKPHLVLGLLWQIIKVGLFADIEISRNEALIALLNEGEDLEELMKLSPEELLLRWVNYHLTNAGWRTISNFSQDIKEGNDLKRAEFMLREADKLGCRQFVTPADVVSGNPKLNLAFVANLFNTYPSLQKPDNDIDMNLLEGESKEERTFRNWMNSLGVNPYVNHLYSDLADALVIFQLYEMIRVPVDWSHVNKPPYPALGGNMKKIENCNYAVKLGKNKAKFSLVGIAGQDLNEGNSTLTLALVWQLMRRYTLNVLSDLGEGEKVNDAIIIEWVNQTLKSANKNTFISSFKDKSISTSLPVLDLIDAIAPNAVRQEMIKRDDLSDEDKLNNAKYAISVARKIGARIYALPDDLVEVKPKMVMTVFACLMGKGLNKIK*