Part of scaffold_580 (Scaffold)

For more information consult the page for scaffold_580 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SCN3B ENSTTRG00000011149 (Bottlenosed dolphin)

Gene Details

sodium channel, voltage-gated, type III, beta subunit

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010570, Bottlenosed dolphin)

Protein Percentage 98.43%
cDNA percentage 98.43%
Ka/Ks Ratio 0.12759 (Ka = 0.0068, Ks = 0.053)

SCN3B ENSBTAG00000016768 (Cow)

Gene Details

Sodium channel subunit beta-3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022302, Cow)

Protein Percentage 97.91%
cDNA percentage 96.34%
Ka/Ks Ratio 0.05222 (Ka = 0.009, Ks = 0.1716)

SCN3B  (Minke Whale)

Gene Details

sodium channel, voltage-gated, type III, beta subunit

External Links

Gene match (Identifier: BACU017375, Minke Whale)

Protein Percentage 88.08%
cDNA percentage 91.61%
Ka/Ks Ratio 0.45342 (Ka = 0.0776, Ks = 0.1712)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 825 bp    Location:45262..66143   Strand:+
>bmy_10896
ATGCCTGACTTCAACAGATTGTTTCCCCTGGCTTCCCTCCTGCTCATTTTGTGGGCTGGCGTCTGCTTCCCTGTGTGTGTGGAAGTGCCCTCGGAGACGGAGGCCGTTCAGGGCAATCCCATGAAGCTGCGCTGCATCTCCTGCATGAAGAGGGAGGACGTGGAGGCCACCACGGTGGTGGAATGGTTCTACAGGCCCGAGGGCGGTAAAGATTTCCTTCCCTTTTTTCCTGCCCACCCCTTCCTGCCGTGTCCACGTGCCCTGACACCTGTGTGCCTTTGCCTGTCTTTCCCTATTTTGCTCTCTTCCCTGCCCTCCTCTGAGCCACCCATCCCACTTCCACATTTGGGAGCTCCTGGTAACATTGTCTCTGTCCCCGCGTCCGAGCACCATTCTGGTCCTTTTCTCTGCCCTGTCCCCACCTCTACCCTGTCTTCTCTCCTACTCCCTCTGCTTCTCTACCTGCAGATCTATGAGTATCGGAACGGCCACCAGGAGGTGGAGAGCCCCTTCCAGGGACGCCTGCAGTGGAACGGGAGCAAAGACTTGCAGGACGTGTCCATCACTGTGCTCAATGTCACCCTGAACGACTCCGGCCTCTACACCTGCAACGTGTCCCGGGAGTTTGAGTTTGAGACACATCGCCCCTTCGTGAAGACCACCCGGCTGATCCCCCTCCGTGTCACCGAGGAGGCTGGAGAGGACTTCACCTCTGTGGTCTCAGAAATCATGATGTACATCCTCCTGGTCTTCCTCACTCTGTCTGACTACCTGGCTATCCCATCGGAGAACAAAGAGAACTCTGCGGTACCAGTGGAGGAATAG

Related Sequences

bmy_10896T0 Protein

Length: 275 aa      View alignments
>bmy_10896T0
MPDFNRLFPLASLLLILWAGVCFPVCVEVPSETEAVQGNPMKLRCISCMKREDVEATTVVEWFYRPEGGKDFLPFFPAHPFLPCPRALTPVCLCLSFPILLSSLPSSEPPIPLPHLGAPGNIVSVPASEHHSGPFLCPVPTSTLSSLLLPLLLYLQIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFETHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLSDYLAIPSENKENSAVPVEE*