Sequence details bmy_10959 (Coding sequence)

Part of scaffold_579 (Scaffold)

For more information consult the page for scaffold_579 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SPDEF ENSTTRG00000007816 (Bottlenosed dolphin)

Gene Details

SAM pointed domain containing ets transcription factor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007381, Bottlenosed dolphin)

Protein Percentage 98.81%
cDNA percentage 98.42%
Ka/Ks Ratio 0.05372 (Ka = 0.0047, Ks = 0.0872)

SPDEF ENSBTAG00000021993 (Cow)

Gene Details

SAM pointed domain-containing Ets transcription factor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000029329, Cow)

Protein Percentage 94.63%
cDNA percentage 94.03%
Ka/Ks Ratio 0.04992 (Ka = 0.0223, Ks = 0.446)

SPDEF  (Minke Whale)

Gene Details

SAM pointed domain containing ETS transcription factor

External Links

Gene match (Identifier: BACU012207, Minke Whale)

Protein Percentage 99.7%
cDNA percentage 99.01%
Ka/Ks Ratio 0.01803 (Ka = 0.0012, Ks = 0.0643)

Additional orthologs identified in other species via the OPTIC pipeline.

SPDEF (Human)   Spdef (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1014 bp    Location:181468..174915   Strand:-
Raw sequence 
>bmy_10959
ATGGGCAGCGCCAGCCCGGGCCTGAGTGGTGTCCCCCCCAGCCGCCTCCTGCTGCCCCCCGACACTGTGCTACGGACTGGCCTGGAGAAGGTGGCAGTGGGGGCAGGGGCAATGGGGCCCGAGAGACGGGACTGGAGCCCCAGCCCACCTGCCACACCTGAGCAGGGCCTGTCCACCTTCTACCTCTCCTACTTCGACATGCTGTACTCCGAGGACAGCAGCTGGGTGGCCAAGGGCCCCGGGGCCAGCACTCGGGAGGAGCCTCCCGACGAGCCCGAGCAGTGCCCCGTCATCGACAGCCAAGCCCCGGGGGGCAGCCTGGACCTGGCGCCGGGCGAGCTGACCCTGGAGGAGCATTCACTGGAGCAGGTGCAGACCATGGTGGTGGGCGAGGTGCTCAAGGACATCGAGACGGCCTGCAAGCTGCTCAACATCACGGCAGACCCCGTGGACTGGAGCCCTGGCAACGTGCAGAAGTGGCTCCTGTGGACGGAGCACCAGTACCGGCTGCCCTCCGTGGGCAAGGCCTTCCAGGAGCTGGGGGGTAAGGAGCTGTGTGCCATGTCGGAGGAGCAGTTCCGCCAGCGCTCGCCCCTGGGCGGGGACGTGCTGCACGCCCACCTGGACATCTGGAAATCAGCGGCCTGGATGAAAGAGAGGACGTCCCTGGGGGCGATTCACTACTGTGCGTCGACCAGCGAAGAGAGCTGGACGGACAGCGAGGTGGACTCGTCCTGCTCYGGGCAGCCCATCCACCTGTGGCAGTTTCTCAAGGAACTGCTGCTGAAGCCACACAGCTATGGCCGCTTCATCCGGTGGCTCAACAAGGAGAAGGGCATCTTCAAAATCGAGGACTCCGCGCAGGTGGCCCGGCTGTGGGGCATCCGCAAGAACCGCCCCGCCATGAACTACGACAAGCTGAGCCGCTCCATCCGCCAGTATTACAAGAAGGGCATCATCCGCAAGCCGGACATCTCCCAGCGCCTGGTCTACCAGTTCGTGCACCCCATCTGA

Related Sequences

bmy_10959T0 Protein

Length: 338 aa      View alignments
>bmy_10959T0
MGSASPGLSGVPPSRLLLPPDTVLRTGLEKVAVGAGAMGPERRDWSPSPPATPEQGLSTFYLSYFDMLYSEDSSWVAKGPGASTREEPPDEPEQCPVIDSQAPGGSLDLAPGELTLEEHSLEQVQTMVVGEVLKDIETACKLLNITADPVDWSPGNVQKWLLWTEHQYRLPSVGKAFQELGGKELCAMSEEQFRQRSPLGGDVLHAHLDIWKSAAWMKERTSLGAIHYCASTSEESWTDSEVDSSCSGQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHPI*