Part of scaffold_579 (Scaffold)

For more information consult the page for scaffold_579 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SNRPC ENSTTRG00000007827 (Bottlenosed dolphin)

Gene Details

small nuclear ribonucleoprotein polypeptide C

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007393, Bottlenosed dolphin)

Protein Percentage 81.32%
cDNA percentage 83.88%
Ka/Ks Ratio 0.71117 (Ka = 0.1662, Ks = 0.2336)

SNRPC ENSBTAG00000024549 (Cow)

Gene Details

U1 small nuclear ribonucleoprotein C

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000034056, Cow)

Protein Percentage 93.08%
cDNA percentage 90.57%
Ka/Ks Ratio 0.25101 (Ka = 0.0562, Ks = 0.224)

SNRPC  (Minke Whale)

Gene Details

small nuclear ribonucleoprotein polypeptide C

External Links

Gene match (Identifier: BACU018064, Minke Whale)

Protein Percentage 93.08%
cDNA percentage 93.29%
Ka/Ks Ratio 0.52344 (Ka = 0.0561, Ks = 0.1072)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 651 bp    Location:374083..387782   Strand:+
>bmy_10961
GTGAAGGGAGGAGCAGGACAAGCCCCGCCCCTCGCTCTGCCGACAAAGCCGTACCGCAGGCGCAGCGCAGCTGGCGGATTGGATGACTGGGTGGGGCTTCTGCAGTCGCATTTGACTCATCGCTTCCGCCGCGTCGGCGCTCACTGTGCGCGTCACTTCCGGGCGGCGCGGAACGGAGTTGCTGAAGGCCTGCAGAGCGACATGCCTAAATTTGTGGAACATCCATCTGTGAGAAAGACACACTGCAGTGGTAGGAAACACAAAGAGAATGTGAAAGACTACTATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGACAAAACAACCGCTGCATTCCAACAAGGAAAGATACCTCCTACTCCATTCTCTGCTCCTCCTCCTGCAGGGGCAATGATTCCACCTCCCCCCAGTCTCCCGGGTCCTCCTCGCCCTGGGATGATGCCAGCACCCCACATGGGGGGCCCTCCCATGATGCCAATGATGGGCCCTCCTCCTCCTGGGATGATGCCAGTGGGACCTGCTCCTGGAATGAGGCCGCCTATGGGAGGCCACATGCCAATGATGCCTGGGCCCCCAATGATGAGACCTCCCGCCCGTCCCATGATGGTGCCCACCCGGCCAGGAATGACTCGACCAGACAGATAA

Related Sequences

bmy_10961T0 Protein

Length: 217 aa      View alignments
>bmy_10961T0
VKGGAGQAPPLALPTKPYRRRSAAGGLDDWVGLLQSHLTHRFRRVGAHCARHFRAARNGVAEGLQSDMPKFVEHPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRPDR*