Part of scaffold_586 (Scaffold)

For more information consult the page for scaffold_586 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RNPC3 ENSBTAG00000019091 (Cow)

Gene Details

RNA-binding protein 40

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025416, Cow)

Protein Percentage 91.86%
cDNA percentage 92.51%
Ka/Ks Ratio 0.22068 (Ka = 0.0475, Ks = 0.2152)

RNPC3  (Minke Whale)

Gene Details

RNA-binding region (RNP1, RRM) containing 3

External Links

Gene match (Identifier: BACU002765, Minke Whale)

Protein Percentage 96.32%
cDNA percentage 97.16%
Ka/Ks Ratio 0.78174 (Ka = 0.0276, Ks = 0.0353)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1725 bp    Location:165691..139078   Strand:-
>bmy_11006
ATGGCGGCTCCAGAACAGCCGCTGCCGATGTCGAGAGGCTGCCAGAGTTCTGCTTCGCTTTCTCCGCCGCGGGGCGACCGAACCCTTCTAGTGAGGCACCTGCCAGCCGAGCTAACCGCTGAGGAGAAAGAGGACTTACTGAAGTATTTCGGGGCGCAGTCCGTGCGCGTCCTGTCCGATAAAGGGCGACTGAAACATACAGCTTTTGCTACTTTCCCTAATGAAAAAGCAGCTATAAAGGCATTGACAAGACTTCATCAACTGAAGCTTTTAGGTCATACTTTAGTTGTTGAATTTGCAAAAGAGCAAGATCAAGTTCATTCACCATGTCCTTCTTCAAGCACTGAAAAAAAGAAAAAGTCTGATGATACTGTGGAAGATGATAAAGAAAAGAAAGAACTTGATTGTTTAACCATAGAAAATGGAATTGCACCAAACCATGGGCTGACTTTTCCTCTAAATTCATGCCTCAAGTATATGTACCCACCACCTTCAAGCACGATTCTAGCAAACATAGTAAATGCTTTGGCAAGTGTGCCTAAGTTCTACGTACAGGTGCTTCATCTTATGAATAAAATGAATTTGCCCACACCTTTTGGACCAATTACTGCAAGGCCTCCCATGTATGAAGACTATATGCCACTACATGCTCCTCTTCCACCTGCATCTCCTCAGCCACCGGAGGAACCTCCTTTGCCAGATGAGGATGAGGAATTATCTAGTAAAGAATCAGAATATGAAAGCAGTGATGATGAAGACCGTCAGAGAATGACCAAACTAATGGAACTAGCAAATCTTCAGCCCAAAAGACCAAAAACAATAAAGCAGCGCCATGTGAGAAAAAAGAGAAAAATAAAGGATATGTTGAATATACCATCATCTGCTTCACACAGCAGTTTACATCCAGTGTTGTTACCTTCGGATGTATTTGACCAACCACAACCTGTAGGTAATAAAAAAATTGAATTCCATATATCTACCGACATGTCAGCTGCATTTAAGAAAGATTTAGAAAAAGAACAAAATTTTGAAGAACAAAATTGTGACTTACCTGCTTCTGAAGTTGATGCATCCAATATAGGATTTGGAAAAATCTTCCCAAAACCAAATTTGAGCATCGCAGAGGAGATTAAAGAAGACTCTGATGAAATGCCATCAGAATGTATTTCTAGAAGGGAGTTGGAAAAGGGCAGAATTTCTAGAGAAGAAATGGAAACATTTTCAGTTTTTAGAAGTTATGAACCTGGTGAACCAAACTGTAGAATTTATGTAAAGAATTTAGCTAAACAAGTTCAAGAAAAGGACCTTAAATTTATTTTTGGAAGATACGTTGACTTTTCGTCGGAAACACAACGCATAATGTTTGATATACGCTTGATGAAAGAAGGTCGCATGAAAGGACAAGCTTTCATTGGACTTCCAAATGAAAAAGCAGCAGCAAAAGCATTAAAGGAAGCTAATGGATACATTCTTTTTGGAAAACCTATGGTGGTTAAGCATTCCTGCGTAAATACTGCTGTAATACTGTCATACAAAGTTACATTTGTTGAAAATTTAAATAACTGGATTTCAAGGTTCCATTTGAATTTTTCATATCTGTCAACTGCTTTCCAACTTTGTGGAGACGAAATTGACCACCTGGACTATGGAACTTTTTATATTAAATGTAAATTTTCTTTTATGATTACAAATATTGCCCTTTTTTCCTTCTTACCTGGATACTAA

Related Sequences

bmy_11006T0 Protein

Length: 575 aa      View alignments
>bmy_11006T0
MAAPEQPLPMSRGCQSSASLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDQVHSPCPSSSTEKKKKSDDTVEDDKEKKELDCLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLHAPLPPASPQPPEEPPLPDEDEELSSKESEYESSDDEDRQRMTKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNIPSSASHSSLHPVLLPSDVFDQPQPVGNKKIEFHISTDMSAAFKKDLEKEQNFEEQNCDLPASEVDASNIGFGKIFPKPNLSIAEEIKEDSDEMPSECISRRELEKGRISREEMETFSVFRSYEPGEPNCRIYVKNLAKQVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYILFGKPMVVKHSCVNTAVILSYKVTFVENLNNWISRFHLNFSYLSTAFQLCGDEIDHLDYGTFYIKCKFSFMITNIALFSFLPGY*