Part of scaffold_600 (Scaffold)

For more information consult the page for scaffold_600 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PSPC1 ENSTTRG00000003343 (Bottlenosed dolphin)

Gene Details

paraspeckle component 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003131, Bottlenosed dolphin)

Protein Percentage 88.66%
cDNA percentage 90.12%
Ka/Ks Ratio 0.48864 (Ka = 0.089, Ks = 0.1822)

PSPC1 ENSBTAG00000003934 (Cow)

Gene Details

Paraspeckle component 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005134, Cow)

Protein Percentage 87.37%
cDNA percentage 87.03%
Ka/Ks Ratio 0.25364 (Ka = 0.0935, Ks = 0.3686)

PSPC1  (Minke Whale)

Gene Details

paraspeckle component 1

External Links

Gene match (Identifier: BACU000175, Minke Whale)

Protein Percentage 85.3%
cDNA percentage 88.6%
Ka/Ks Ratio 0.61553 (Ka = 0.1108, Ks = 0.18)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1167 bp    Location:529973..483234   Strand:-
>bmy_11024
ATGGCGCTCGCCCTTCCCGGCGAGCCGCCCGCGCCCGCCGTGCCCGCCGAGGACCGGCCGGCCGAGGAGGGCGGCTTCACCATCGACATCAAGAGCTTCCTCAAGCCGGGTGAGAAGACGTACACGCAGCGCTGCCGCCTCTTCGTGGGGAACCTGCCCACGGACATCACCGAGGACGACTTCAAGCGGCTGTTCGAGCGCTACGGCGAGCCCAGCGAGGAGTCCAGAACACTGGCTGAAATTGCAAAAGCAGAGCTGGATGGCACCATTTTGAAGAGCAGACCTCTCCGAATTCGTTTTGCTACACATGGAGCAGCCTTAACTGTCAAGAACCTCTCTCCGGTTGTCTCCAATGAGCTTCTAGAGCAAGCATTTTCCCAGTTTGGTCCAGTAGAGAAAGCTGTGGTTGTCGTGGATGACCGTGGTAGAGCTACGGGAAAAGGCTTTGTGGAATTCGCAGCAAAACCTCCTGCACGAAAGGCTCTGGAGAGATGTGGTGATGGGGCATTCTTGCTAACAACGACCCCTCGTCCGGTCATTGTGGAGCCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTAATGCAGAAAACTCAGCAGTATCATAAGGAAAGAGAACAGCCACCGCGTTTTGCTCAGCCTGGGACGTTTGAATTTGAGTATGCATCTCGATGGAAGGCTCTGGATGAAATGGAGAAGCAGCAGCGTGAGCAGGTTGATAGAAACATCCGAGAAGCCAAAGAGAAACTGGAGGCGGAGATGGAAGCGGCCCGGCACGAGCACCAGCTGATGCTCATGCGGCAAGATTTAATGAGGCGTCAAGAGGAACTCAGACGCTTAGAAGAACTCAGAAACCAAGAGCTGCAAAAACGGAAGCAAATACAGCTGAGGCATGAAGAAGAGCACCGTCGTCGTGAAGAGGAAATGATCCGACACAGAGAACAGGAGGAGCTGAGGCGACAGCAGGAGGGCTTTAAGCCAAACTATATGGAAAATCTGTTCAAAAGCCATGATTCTTTAGTAACTTTGAAATTAGGCCCTCTTATGTGCTTCTCTTTTTTCACTGTTCATTATAAAGGGAGGAATCAAATGGGTCCTGACCTACTCGACGAAGTAACTGAACACGAGTCAGAGATCTTTCGAGAACCAAACTGGTAG

Related Sequences

bmy_11024T0 Protein

Length: 389 aa      View alignments
>bmy_11024T0
MALALPGEPPAPAVPAEDRPAEEGGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRRQQEGFKPNYMENLFKSHDSLVTLKLGPLMCFSFFTVHYKGRNQMGPDLLDEVTEHESEIFREPNW*