Sequence detailsbmy_11024 (Coding sequence)

Part of scaffold_600 (SequenceType object (1))

For more information consult the page for scaffold_600 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PSPC1ENSTTRG00000003343 (Bottlenosed dolphin)

Gene Details

paraspeckle component 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003131, Bottlenosed dolphin)

Protein Percentage 88.66%
cDNA percentage 90.12%
Ka/Ks Ratio 0.48864 (Ka = 0.089, Ks = 0.1822)

PSPC1ENSBTAG00000003934 (Cow)

Gene Details

Paraspeckle component 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000005134, Cow)

Protein Percentage 87.37%
cDNA percentage 87.03%
Ka/Ks Ratio 0.25364 (Ka = 0.0935, Ks = 0.3686)

PSPC1 (Minke Whale)

Gene Details

paraspeckle component 1

External Links

Gene match (Identifier: BACU000175, Minke Whale)

Protein Percentage 85.3%
cDNA percentage 88.6%
Ka/Ks Ratio 0.61553 (Ka = 0.1108, Ks = 0.18)

Additional orthologs identified in other species via the OPTIC pipeline.

PSPC1 (Human)   Pspc1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1167 bp    Location:529973..483234   Strand:-
Raw sequence 
>bmy_11024
ATGGCGCTCGCCCTTCCCGGCGAGCCGCCCGCGCCCGCCGTGCCCGCCGAGGACCGGCCGGCCGAGGAGGGCGGCTTCACCATCGACATCAAGAGCTTCCTCAAGCCGGGTGAGAAGACGTACACGCAGCGCTGCCGCCTCTTCGTGGGGAACCTGCCCACGGACATCACCGAGGACGACTTCAAGCGGCTGTTCGAGCGCTACGGCGAGCCCAGCGAGGAGTCCAGAACACTGGCTGAAATTGCAAAAGCAGAGCTGGATGGCACCATTTTGAAGAGCAGACCTCTCCGAATTCGTTTTGCTACACATGGAGCAGCCTTAACTGTCAAGAACCTCTCTCCGGTTGTCTCCAATGAGCTTCTAGAGCAAGCATTTTCCCAGTTTGGTCCAGTAGAGAAAGCTGTGGTTGTCGTGGATGACCGTGGTAGAGCTACGGGAAAAGGCTTTGTGGAATTCGCAGCAAAACCTCCTGCACGAAAGGCTCTGGAGAGATGTGGTGATGGGGCATTCTTGCTAACAACGACCCCTCGTCCGGTCATTGTGGAGCCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTAATGCAGAAAACTCAGCAGTATCATAAGGAAAGAGAACAGCCACCGCGTTTTGCTCAGCCTGGGACGTTTGAATTTGAGTATGCATCTCGATGGAAGGCTCTGGATGAAATGGAGAAGCAGCAGCGTGAGCAGGTTGATAGAAACATCCGAGAAGCCAAAGAGAAACTGGAGGCGGAGATGGAAGCGGCCCGGCACGAGCACCAGCTGATGCTCATGCGGCAAGATTTAATGAGGCGTCAAGAGGAACTCAGACGCTTAGAAGAACTCAGAAACCAAGAGCTGCAAAAACGGAAGCAAATACAGCTGAGGCATGAAGAAGAGCACCGTCGTCGTGAAGAGGAAATGATCCGACACAGAGAACAGGAGGAGCTGAGGCGACAGCAGGAGGGCTTTAAGCCAAACTATATGGAAAATCTGTTCAAAAGCCATGATTCTTTAGTAACTTTGAAATTAGGCCCTCTTATGTGCTTCTCTTTTTTCACTGTTCATTATAAAGGGAGGAATCAAATGGGTCCTGACCTACTCGACGAAGTAACTGAACACGAGTCAGAGATCTTTCGAGAACCAAACTGGTAG

Related Sequences

bmy_11024T0 SequenceType object (3)

Length: 389 aa      View alignments
>bmy_11024T0
MALALPGEPPAPAVPAEDRPAEEGGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRRQQEGFKPNYMENLFKSHDSLVTLKLGPLMCFSFFTVHYKGRNQMGPDLLDEVTEHESEIFREPNW*