Part of scaffold_601 (Scaffold)

For more information consult the page for scaffold_601 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RGAG1 ENSTTRG00000010954 (Bottlenosed dolphin)

Gene Details

retrotransposon gag domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010386, Bottlenosed dolphin)

Protein Percentage 81.07%
cDNA percentage 82.64%
Ka/Ks Ratio 0.50891 (Ka = 0.0254, Ks = 0.0499)

RGAG1 ENSBTAG00000037650 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000052128, Cow)

Protein Percentage 82.19%
cDNA percentage 89.28%
Ka/Ks Ratio 0.63758 (Ka = 0.1043, Ks = 0.1636)

RGAG1  (Minke Whale)

Gene Details

retrotransposon gag domain containing 1

External Links

Gene match (Identifier: BACU019779, Minke Whale)

Protein Percentage 96.91%
cDNA percentage 98.21%
Ka/Ks Ratio 0.65497 (Ka = 0.0149, Ks = 0.0227)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4185 bp    Location:574129..578857   Strand:+
>bmy_11113
ATGGCAGATATGTCAATACCCTTACGTTCACTGCGATTCAGCAATGTGCTGACGGAGGAAAGTGTCGACCCCCAAAACAGGGAGACGACCTGCTCTGGACCAATGATAGAGAACAGAGCAGAGGTCCAAATTCTGCATTCTAGTGTCCAGCCTATGGTCTCAAGTTCAGCATCAGACCCTGGAGGGATGTCCACACAGCTGATGACATCCCCAGCCTTTGACACCATGGCCGTACCTCTAATGGGAGCAGCAAACTCTGGAGCACTGTCCCCACCGCTAATGCCAGCCTCAGACTCTGGGACACTGTCCCCATTGTTAATGCCAGCTTCAGATTCAGAGGCACTGTCCCCATTGTTGATACCAACCTCAGACTCTGGGGTGCTGTCCCCATTGTTGATACCAACCTCAGATTCTGGAACACTGTCCCCATTGCTGTCCACTTCAGAGTATGGATTAATGTCCCCAGGGCTGATGACAATTCCTGACTTTGGAACAATGTCCACAGCACTAATGGGAACACCAGATTCTGCAGAAATATCACCACTGGCAATGCCAGCTCCACCCTCTGAAGCGATGTCCACGCCATCGATGCTAGCCCCAGATCCTGGAGAGATCTCCCCACTCCTAATGCCAGATGTGAACCCCGGAGTGATGTCCCCACAGCCAATGCCAGCTCCAGGCTCTGAAGGGATGTCACCATTGCAAATTACAGACGAAGACACTGAAGCAATGTCTAAAGTGCTAATGACTGCCCTGGCCTCTGGAGAGATCTCTTCACTGCTCATGTCAGGCACAGACTCTGAAGCSATCTCCTCACTGATAATGTCAGCCYTAACTTCTGGAGCAACGTCCACCCAGCCAACGAGCACCCAAGACTCTGGGGAAATGTCCACCCAGCTAATGTCAGGCCCAGACTCTGGAGTAGTGTCTTCACCACTAATGACAGCTCCAGGCTCTGGAGCAATGTCCTCACTGCTCCTGTCAGTCCCTGATGCTGGAGAAATGCCCACATTGCCAAAGCCAGCCCCAGACGCTGAAGCAATGTCCCCACTGGTAATGATGGCCCTAACCTCTGGCGGGATGCCCACCCAGCTGATGCCAGCCCAAGGCTCTGGAGTGATGTCCTCACGGTTAACACAAAATCTAGACTCTCAAATTGTGTCTAGTCCACCAATGAGAGCAACAGCCTCCGGGGGGATGTCCGCACCGCCAGTGAGAGCCTCAGAGCCTGGAGCAAGGTCGACACCGAGAATGAGAGCCCCAGCCTCTGGAAGTGTGTCCACGTTGCTAAAGACAGTCCCAGACTCTGCAGCACTGTCCACCCCGCTGATGACGGTTGCAACCTCTGGAGCAAAGTCCACAGAGCAAATGTCAACCGCAGCCTCTAGAGCGATGTCCACGCAGTTAGCAATGGCTAGAACTTCTGGAGCCACGTCCATGGGCTTTATGAGAGTCCCAGCCAATGGGGCRATGTCCACACTGCGAATGAGAGCCCCAGCCTCTGGAACAATGTCCACACTGCCGAGTACAGCCCCAGTCTCTGAAACAATGTCTGTGCTACAGATGACAGCCTCAGCCTCTGGGTCAGTGTCCACACYGCAAATGAGGGCGCCTGTCTCTGGAGCAATGTCTGTGTCACAAAGGAGAGCCACAGCCTCGGGAGTGACAGCTGTACCACAAATGAGAGCCTCTGGAGCCATGTCCACCCCACGGATGACAGCCAAAGCCTCTGGATCCATGTCTACACTGTTAATGAGAGACACAGCCTCGGCAGTGATGTCCGTGCCACAGATGAGAGCTATGGCCTCGGGAGCATTGTCCAAGCCACTAACAACATCCAAAGCCGCAGAAGCAATGTTCATGCAGCAAATGACAACTGCAGCTTCTGGAGAGATCTCCACAATGCTAATGAGAGACACAGCTTCTGGAGCCGTGTCCATGCCGCAGATGACAGACACTGCCTCTGCAGCGATGTCCACACCGCTAATGAGAGCCCCAGCCTCTGGCGACATGTCCACACCACAAATGACAGCCGCAGCCCCTGGAACTATGTCCATGCCTCTAATGAGAGCCCCAGGCCCTGGAGCCATGCCCATGGCGCTAATGAGATCCACAGCCTCTGGAAAGATGCCCAGTCAGCCAATGAGCGCCCAAGACTTTGGGGGGATGTCCATGTCGCTCAGGAGATCCATGACCTCTGGAGGGATGTCCCTACTGCAGACGCAAGCCCCAGCCTCTGAATTGATGTCCACACCAAAAATGAGAGCCCCGGCCTTTGRGGCGGTGTCCACACCACTGATGAGAGCCTCAGACCCTGGAGAGATGTCCACACTGCTCACAAGAGCTTCATCCTCTGGAGAGATGTCCCCAGCACTAACGAGACCCCCAGCTTCTGGAGAGATAGCCACGCCTCTGAGAGCCCCAGCTTATGGAGCAATGTCTACTCCGCAAAAGACAGCCACAGCCTCTGGAATGATGTCCAAGCCACAAATGAGGGCTCCAGTCTCTGGAGAGATATCTACATTGCTAATGAGATCCACAGCCTCTGGAGTGATGTCCGTGCCTCAAATGACAGCCGCGGCCTCTGGAGGGGTGTCCATGCCACTGATGAGAGCCCCAGCCTCCAGGGCAACATCCACTACGCAAATGATGCCCACAGCTTCTGGAGAGATGTGCATGCTATCAGTGCGAGCCCCTGCCTCGGGAGTGATGTCCCCGCCATTATTAAGGGCTCCAATGTCTGGAATTATGTCCACACCACTAAGGAGACCTTCAGCCTCTGAAGCTGTGTCCACAGAGTTAATGAGAGCTCCAGCCTCTGGAAAGATGTCCACCACACAAACAACAGCTGTGGCCTCTGGAGGGATGTCCAAGCCATTCATTAGAGCCACGGCCTCTGGAACAATGCCCATGCCATTGATGTCAGCCATGGCTTCTGGAGAGATGTCTATGCCGCTGATGAAAAGCATGGCCTCTGGGGCAACGTCCACACTGCAAAAAAGAGTTGTGAGTTCTGGACCTACTTCCTTGCCACAAATGACATACGCAACCTCTGGAGGGATGCCTGCATCACCGATGAGAGCCTCAGCTTCTGGAGCAACGTCCGTATCGCTTATGAGAGCCTCGGCTTCTGGAATGATGTCCATGCCACTTCTGAGAGCCACAGCCTCTGGGGGGATGTCCATGCCACAAATGGCGGCCACGGCCTCTAGAGGGGTATCCATGCCGCTAATGAGGGCTCCAGTCCCAGGAGCCATGTCCACACCACAAATGGCAACCACAGCCTCTGGAATGATGTCCACTCTGGAAATCAAAGCCACAGACTCTGGGGAAACATGTGCCTCTCACATCAACGTCAGAGCCTCTGGATCAAAGTCCACACCACACGTGACTGCCATGACCCCTGAAACAATGAACCAACCGCCAGAGGAAGTCCCATCTTTTGGCATGCTGACCCCAGCACTCTGTTACCTCTTAGCAGAACAGGAAGCAGCCCGGGGTTCGTGCTCTGTGGAGGAGGAGATGGAGATTGATGAGGAGAAGCAAATGAAGGGATTTTTGAACGATTCAGAGAAAATGGCCTTTCTGGTGTCTCTTCATCTGGGGGCAGCAGAGAGGTGGTCCATCTTGCAGATGGAGGTAGGAAACCCCCTCTCCAATGAAGATAAATCTTTCCTGAGCAGATCCCAGGGCTTATATGACTCCCTATCTGAAATAGACATCCTCAGTGCCGTTCTTTGCCATCCCAAGCAGGGCCAGAAGTCAGTCAGGCAGTATGCCACTGACTTCCTCCTGCTGGCCCGGCATTTGTCTTGGTCTGATGCCATTCTGCGGACCAGGTTTCTGGAAGGACTCTCRGAAGCTGTTGCCACCAAAATGGGCCGGATCTTCCTGAAGGTGGCCGGCAGCCTAAAGGAGCTAATAGACAGGTCTCTCTATACCGAGTGCCAGCTGGCTGGAGAGAAGGATTCCCCGGGCAGCTCAAGCCAGGTTCTGCCGTCAGCCTGTAAGCGGAATAACGAGGAGGCAATGGAGAATGAACTGAACTCTCCACAGCAGACCGAGGAGCACCAGCATGTTCCCAAACGCTGTTACTACCTGAAAGAGCATGGAGACCCTCAAGAGGGTCTGCACGACCACCTTCGACAGAGCACAGGCCATCAGAAGGCCCCCACTAACAAGTAA

Related Sequences

bmy_11113T0 Protein

Length: 1395 aa      View alignments
>bmy_11113T0
MADMSIPLRSLRFSNVLTEESVDPQNRETTCSGPMIENRAEVQILHSSVQPMVSSSASDPGGMSTQLMTSPAFDTMAVPLMGAANSGALSPPLMPASDSGTLSPLLMPASDSEALSPLLIPTSDSGVLSPLLIPTSDSGTLSPLLSTSEYGLMSPGLMTIPDFGTMSTALMGTPDSAEISPLAMPAPPSEAMSTPSMLAPDPGEISPLLMPDVNPGVMSPQPMPAPGSEGMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSALTSGATSTQPTSTQDSGEMSTQLMSGPDSGVVSSPLMTAPGSGAMSSLLLSVPDAGEMPTLPKPAPDAEAMSPLVMMALTSGGMPTQLMPAQGSGVMSSRLTQNLDSQIVSSPPMRATASGGMSAPPVRASEPGARSTPRMRAPASGSVSTLLKTVPDSAALSTPLMTVATSGAKSTEQMSTAASRAMSTQLAMARTSGATSMGFMRVPANGAMSTLRMRAPASGTMSTLPSTAPVSETMSVLQMTASASGSVSTXQMRAPVSGAMSVSQRRATASGVTAVPQMRASGAMSTPRMTAKASGSMSTLLMRDTASAVMSVPQMRAMASGALSKPLTTSKAAEAMFMQQMTTAASGEISTMLMRDTASGAVSMPQMTDTASAAMSTPLMRAPASGDMSTPQMTAAAPGTMSMPLMRAPGPGAMPMALMRSTASGKMPSQPMSAQDFGGMSMSLRRSMTSGGMSLLQTQAPASELMSTPKMRAPAFXAVSTPLMRASDPGEMSTLLTRASSSGEMSPALTRPPASGEIATPLRAPAYGAMSTPQKTATASGMMSKPQMRAPVSGEISTLLMRSTASGVMSVPQMTAAASGGVSMPLMRAPASRATSTTQMMPTASGEMCMLSVRAPASGVMSPPLLRAPMSGIMSTPLRRPSASEAVSTELMRAPASGKMSTTQTTAVASGGMSKPFIRATASGTMPMPLMSAMASGEMSMPLMKSMASGATSTLQKRVVSSGPTSLPQMTYATSGGMPASPMRASASGATSVSLMRASASGMMSMPLLRATASGGMSMPQMAATASRGVSMPLMRAPVPGAMSTPQMATTASGMMSTLEIKATDSGETCASHINVRASGSKSTPHVTAMTPETMNQPPEEVPSFGMLTPALCYLLAEQEAARGSCSVEEEMEIDEEKQMKGFLNDSEKMAFLVSLHLGAAERWSILQMEVGNPLSNEDKSFLSRSQGLYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLARHLSWSDAILRTRFLEGLSEAVATKMGRIFLKVAGSLKELIDRSLYTECQLAGEKDSPGSSSQVLPSACKRNNEEAMENELNSPQQTEEHQHVPKRCYYLKEHGDPQEGLHDHLRQSTGHQKAPTNK*