Sequence detailsbmy_11116 (Coding sequence)

Part of scaffold_592 (SequenceType object (1))

For more information consult the page for scaffold_592 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RFX5ENSTTRG00000007023 (Bottlenosed dolphin)

Gene Details

regulatory factor X, 5 (influences HLA class II expression)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000006643, Bottlenosed dolphin)

Protein Percentage 98.52%
cDNA percentage 98.79%
Ka/Ks Ratio 0.26879 (Ka = 0.0059, Ks = 0.0219)

RFX5ENSBTAG00000017580 (Cow)

Gene Details

DNA-binding protein RFX5

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000023377, Cow)

Protein Percentage 93.56%
cDNA percentage 93.34%
Ka/Ks Ratio 0.20116 (Ka = 0.0319, Ks = 0.1586)

RFX5 (Minke Whale)

Gene Details

regulatory factor X, 5 (influences HLA class II expression)

External Links

Gene match (Identifier: BACU007250, Minke Whale)

Protein Percentage 97.54%
cDNA percentage 97.92%
Ka/Ks Ratio 0.56262 (Ka = 0.0162, Ks = 0.0288)

Additional orthologs identified in other species via the OPTIC pipeline.

RFX5 (Human)   Rfx5 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1974 bp    Location:23276..29646   Strand:+
Raw sequence 
>bmy_11116
ATGGTAGAACAGGCCGTCCGAGTATCTAGGCAGATCGGGGCTGTTTCAGCCATTCAGAAAAAAGAAAATAAAGCAACGCACGAGCCCGCTGGGCCAGGACCGTGGGGCTGGGCTGGAGTGAAGGTGGCTGCGAGCCCTCATGCCGGGATGGCAGAAGATGAACCTGATGCTAAGAGCCCAAAAACTGGGGGAAGGGCCCCCTCAGGTAGTGCTGAGGCAGGGGAGCCCACCACCCTCCTTCAGAGGCTCCGAGGTACCATTTCCAAGGCCGTGCAGAACAAAGTAGAGGGAATCCTGCAAGATGTACAGAAATTCTCAGACAACGACAAGCTGTATCTCTACCTTCAGCTCCCCTCAGGGCCCAGTACTGGAGACAAAAGCTCAGAGCCAAGTACACTCAGCAATGAGGAGTACATGTATGCTTATAGGTGGATCCGCAACCACCTAGAAGAGCATACTGACACCTGCCTGCCAAAACAAAGTGTTTACGATGCCTATCGGAAGTACTGTGAGAGTCTCGCCTGTTGCCGCCCACTCAGCACAGCCAACTTTGGCAAAATCATCAGAGAGATCTTCCCTGACATCAAAGCCCGAAGGCTTGGTGGCCGGGGCCAGTCCAAATATTGCTACAGTGGCATACGAAGGAAGACCTTGGTATCTATGCCGCCCTTGCCCGGACTTGACCTAAAGGGCTCTGAGAGTCCAGAAATGGGCCCAGAAGTAACCCCAGCACCTCGGGATGAACTGGTTGAAGCAGCCTGTGCCCTGACCTGTGACTGGGCAGAGCGAATCCTGAAACGGTCCTTCAGTTCCATCGTTGAGGTCGCCCGCTTCCTGCTGCAGCAGCATCTCATCTCTGCCCGATCTGCACACGCCAATGTGCTCAAGGCTATGGGGCTTGCTGAAGAGGATGAACATGCCCCTCGGGAACGGTCATCTAAATCCAAGAATGGTGTAGAGAGTCTGGAGGGCGGARCCCATAAGAAACCAGAGAGACAGGCTCAGCCTCCTAAGGAGCTGGACCCCYGGGCTGGGGCTGGACCCCCAGCACGCGGAGAGCGAAAGAAGAGTGTAGTGGAGAGCCCAGCGCCAGCAGCCAATAACCCACAGGTTAATGCCCTAGTGGCCCGGCTGCCTCTGCTTCTCCCTCGGGCCCCTCGCTCACTTATTCCACCAATCCGAGTCTCTCCACCCGTCCTGGCCCCCAAGCTTTCTTCAAGCACTCTGAAAATGGCTACACTGCCTCTGCCCCCTAGAGCTGGGGGACCCCAAGCAGCTGTGCCCATCATTAACATGATCTTACCAACTGTTCCTGCTTTGCCTGGACCTGGACCTGGGCCTGGGCCTGGGCAAGCTCCACCTGGGGGGCTCACTCAGCCGAGGGGCACAGAGAACAGGGAAGTGGGCATAGGTGGTGACCCGGGACCCCATGACAAGGGTGTGAAGAGGACAGCTGAAGTACCTGTGAGTGAGGCCAGTGGGCAGGACCCACCAGCTAAAGCAACAAAGCAGGATATAGAGGATACAGGAAGTGATGCCAAAAGAAAACGGGGGCGCCCTCGAAAAAAATCAGGTGGAAGTAGGGAAAGGAATTCTACCCCTGACAAGTCAGCAGCTGCCGTGGACTCTGCCCAGTCCTCAAGGTTACCACTGGAGACGTGGGCCTCTGGAGGGGAAGGCAACTCAGCTGGAGGGTCAGAGAGGCCAGGGCCAATGGGAGAGGCTGAGAAGGAGATGCTTGCCCAAGGTCAGGAGGATGGTGCTGTTTCCAGAGGAGGAAGGGGCCCCAGTTCCCGGCATGCCAAAGAAGCAGAAGATAAAATTCCTCCTGTCACCCCGAAAGTGAGTGTCATCAAGGGCAGTAGAAGCCAAAAGGAGGCTCTTCATTTGGTCAAGGAAGAGGTAGACACTGCAGCACAGGGTAATAAAGACTTAAAGGGGCATGTGCTTCAAAGCTCCTTACCCCATGAGTGA

Related Sequences

bmy_11116T0 SequenceType object (3)

Length: 658 aa      View alignments
>bmy_11116T0
MVEQAVRVSRQIGAVSAIQKKENKATHEPAGPGPWGWAGVKVAASPHAGMAEDEPDAKSPKTGGRAPSGSAEAGEPTTLLQRLRGTISKAVQNKVEGILQDVQKFSDNDKLYLYLQLPSGPSTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLKGSESPEMGPEVTPAPRDELVEAACALTCDWAERILKRSFSSIVEVARFLLQQHLISARSAHANVLKAMGLAEEDEHAPRERSSKSKNGVESLEGGXHKKPERQAQPPKELDPXAGAGPPARGERKKSVVESPAPAANNPQVNALVARLPLLLPRAPRSLIPPIRVSPPVLAPKLSSSTLKMATLPLPPRAGGPQAAVPIINMILPTVPALPGPGPGPGPGQAPPGGLTQPRGTENREVGIGGDPGPHDKGVKRTAEVPVSEASGQDPPAKATKQDIEDTGSDAKRKRGRPRKKSGGSRERNSTPDKSAAAVDSAQSSRLPLETWASGGEGNSAGGSERPGPMGEAEKEMLAQGQEDGAVSRGGRGPSSRHAKEAEDKIPPVTPKVSVIKGSRSQKEALHLVKEEVDTAAQGNKDLKGHVLQSSLPHE*