Sequence detailsbmy_11125 (Coding sequence)

Part of scaffold_592 (SequenceType object (1))

For more information consult the page for scaffold_592 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

BT.68733ENSBTAG00000020395 (Cow)

Gene Details

lysM and putative peptidoglycan-binding domain-containing protein 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000027183, Cow)

Protein Percentage 93.69%
cDNA percentage 94.5%
Ka/Ks Ratio 0.34046 (Ka = 0.0366, Ks = 0.1074)

LYSMD1 (Minke Whale)

Gene Details

LysM, putative peptidoglycan-binding, domain containing 1

External Links

Gene match (Identifier: BACU007244, Minke Whale)

Protein Percentage 89.7%
cDNA percentage 92.12%
Ka/Ks Ratio 0.5279 (Ka = 0.0695, Ks = 0.1317)

Additional orthologs identified in other species via the OPTIC pipeline.

LYSMD1 (Human)  

Genome Location

Sequence SequenceType object (2)

Length: 621 bp    Location:185878..193311   Strand:+
Raw sequence 
>bmy_11125
ATGGCTTCTCCCTCTAGACAGGCCCCCCTTGGTGGGTCAGGACTGCTTCAAGGGAGCCGGGCTCGTTCTTATGGAAGCCTGGTGCAGTCTGCCTGCTCCCCGGTGAGGGAAAGACGCCTGGAGCATCAGTTGGCGCCCGGAGACACCCTGGCTGGACTAGCGCTCAAATACGGGGTGACGAAAACCCTCTACATCCCCATCCTGACAGAGCCCAGAGACCTGTTCAATGGTTTGGATTCTGAGGAAGAGAAGGATGGAGAGGAAGAGGTACAGCCAAGTAAGGATGAAGTTGGGCCACACTCAGCTGAGAGGAAGAAACAAGAGACAGGTTCGGGACGTGCCAATGGTGAAGTCCTTCCCACACCTGGCCAGGAGCCCCCCATTCATGACCTCTCTGCCTCTGATTTCCTTAAGAAGCTTGATTCACAGATCAGCTTGTCAAAGAAGGCTGCTGCCCAGAAGCTGAAAAAGGGGGAAAGTGGGATACCTGGGGAGGATTCAGGTCTTCACCTGAGCTCTCCTCGGATGCAGCAACGAGCAGTCCTAGGTCCCGTGCCGCTGACCCGGACCTCTCGGACCCGGACACTTCGGGACCAGGAGGATGAAATCTTCAAACTCTGA

Related Sequences

bmy_11125T0 SequenceType object (3)

Length: 207 aa      View alignments
>bmy_11125T0
MASPSRQAPLGGSGLLQGSRARSYGSLVQSACSPVRERRLEHQLAPGDTLAGLALKYGVTKTLYIPILTEPRDLFNGLDSEEEKDGEEEVQPSKDEVGPHSAERKKQETGSGRANGEVLPTPGQEPPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGESGIPGEDSGLHLSSPRMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL*