Sequence details bmy_11127 (Coding sequence)

Part of scaffold_592 (Scaffold)

For more information consult the page for scaffold_592 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEMA6C ENSTTRG00000007007 (Bottlenosed dolphin)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006626, Bottlenosed dolphin)

Protein Percentage 98.61%
cDNA percentage 98.47%
Ka/Ks Ratio 0.15913 (Ka = 0.0065, Ks = 0.0407)

SEMA6C ENSBTAG00000007281 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000009575, Cow)

Protein Percentage 94.6%
cDNA percentage 93.56%
Ka/Ks Ratio 0.16117 (Ka = 0.0297, Ks = 0.1843)

SEMA6C  (Minke Whale)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C

External Links

Gene match (Identifier: BACU007242, Minke Whale)

Protein Percentage 99.16%
cDNA percentage 99.34%
Ka/Ks Ratio 0.30994 (Ka = 0.004, Ks = 0.013)

Additional orthologs identified in other species via the OPTIC pipeline.

SEMA6C (Human)   Sema6c (Mouse)  

Genome Location

Sequence Coding sequence

Length: 2898 bp    Location:204906..217597   Strand:+
Raw sequence 
>bmy_11127
ATGCCCCGTGCCCCCCGCTTCATGCCCTTGCTGCTACTGCTGTTGCTGCTGTCACTTCCCCACACCCAGGCTGCCTTTCCCCAGGACCCCCTCCCTCTGCTGACCTCTGACCTGCAAGGTATTTCCCCATTATCCTGGTTCCGGGGCCTGGAGGATGATGCTGTGGTGGCAGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTAGTGGCTGCCCGGGATCACGTTTTCTCCTTCGATCTTCAAGCCCAAGAAGAAGGGGAGGGGCTAGTGCCCAACAAGTATCTAACATGGAGGAGTCAAGACATGGAGAACTGTGCCGTGCGGGGGAAGCTGACGGACGAGTGCTACAACTACATTCGTGTTCTCGTTCCCTGGGACTCCCAGACACTCCTTGCCTGTGGAACGAACTCATTCAGCCCCGTGTGCCGCAGCTATGGGGTACAAAGGCGAGGGCGGGGCATCAGGACTGGAGTGGGAGAAGAACCCAAGCTGGGCAATCAGTTCAGTGGGGATGGACCAGCAGGGATAACTTCGCTGCAGCAGGAGGGTGAGGAGCTGAGTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCAACGTGGCCGTCTTTGCAGAGGGCAGCCTGTATTCAGCCACAGCCGCGGATTTCCAGGCCAGTGACGCTGTGGTTTACAGAAGCCTTGGGCCTCAGCCCCCACTCCGCTCCGCCAAGTACGACTCCAAGTGGCTCCGAGAGCCACACTTTGTCCACGCTTTGGAGCATGGAGACCATGTCTACTTCTTCTTCCGAGAAGTCTCTGTGGAGGACGCCCGGCTGGGGAGGGTACAGTTCTCCCGTGTGGCCCGTGTGTGTAAGCGTGACATGGGCGGCTCACCTCGGGCCTTGGACCGCCACTGGACATCCTTCCTGAAGCTGCGGCTCAACTGCTCTGTCCCTGGGGACTCTACCTTCTATTTTGACGTCTTACAGGCCTTGACAGGGCCTGTGAACTTGTATGGCCGCTCTGCTCTCTTTGGGGTCTTCACCACCCAGACCAATAGCATCCCCGGCTCTGCGGTCTGTGCCTTCTACCTGGATGATATTGAGCGTGGGTTTGAGGGAAAGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACCCCTGTGTCTGAGGACAGGGTCCCCTCCCCCAGGCCAGGATCCTGTGCAGGAGTAGGTGTAGCTGCATTGTTCCCCTCTTCTCGAGACCTCCCTGATGATGTCCTGACCTTCATCAAGGCTCACCCACTCCTGGACCCTGCCGTGCCGCCTGCCACCCATCAGCCTCTGCTCACCCTCACCAGCAGGGCCCTACTGACCCAGGTAGCTGTGGATGGCATGGCTGGTCCCTACAGTAATACCACAGTCCTGTTCCTTGGCTCCAACGATGGGACAGTGCTGAAGGTGCTGCCCCCATGGGGGCAATCTGGGGGCCCTGAGCCCATTCTGTTGGAAGAGATCGATGCCTACAGCCCCTCCCGGTGCAGTGGGAAGCGGGCAGCCCAAACAGCACGGCGGGTCATAGGGCTGGAGCTGGACACTGAAGGTCACAGGCTCTTTGTGGCTTTTTCTGGCTGTATCATCTACCTCCCTCTCAGTCGATGTGCCCGGCATGGGGCCTGTCGGAGGAGCTGTCTGGCTTCTCAGGACCCATACTGTGGATGGGATAGCTCCAGAGGCTGTGTGGATATCAGGGGACCTGGTGGGATTGATGTGCATCCAGCTGGGAACCAGGAATCCATGGAGCATGATGACTGCCAAGATGGAGCTACTGGGAGTCAGTCTGGCACAGGGGATTCTGCTTATGGCGTGCGACGGGACCTCCCGCCAGACTCAGTCTCCCGCTCCGTCCCCATCCCACTCCTCCTGGCCTGTGTGGCCGCAGCCTTCGCCCTGGGCGCCTCGGTCTCTGGCCTCCTGGTCTCCTGCGCTTGTCGCCGCGCCCACAGACGTCGGAGCAAGGATATCGAGACTGCGGGGCTCCCGCGCCCTCTCTCCCTTCGCAGCTTGGCCCGTCTGCACGGGGCGGGCCCAGAGCCGCAGCCAACGTCCAAGGACGGAGAGGGGGCACAGACACCCCAGCTTTACACCACCTTCCTGCCTCCTCCCGAGGGCGTACCCCCGCCGGAGCTGGCCTGCCTGCCCACCCCGGAGTCCACGCCGGAGCTGCCGGTCAAGCACCTCCGCCACGCCGGGTGTCCCTGGGAGTGGAACCAGAACGGGAACAACGCCAAGGAGGGCCGGGGCCGCGCCCGGGGCGGCAACACGGCGGGCGGCCCCGCGCCGCGCGTGCTGGTGAGGCCGCCGCCGCCCGGCTGTCCCGGGCAAGCCGTGGAAGTCACCACCCTCGAGGAACTGCTGCGCTACCTGCACGGCCCGCAGCCGCCCAGGAAGGAGGCCGAGCCCCCGGCCGCCGCCCCTTTCACCTCGCGGGCGCTGCCGCCCGAGCCCGCCCCCGCCCCCACCCCCACCCTCTTTGCCGGCCCCAGCCTGCTACCCCGGGACTGTGCCACGCCTCGGAGGCTGGACGTGCCCCCGGAGGGCAAGCGCCCGGCCCCCGCCACCCGGCCTGCTGTCTCCGCCCCAGCTCCCCGGCTCGGGGTGGGCGGCAGCCGGAGGTTGCCCTTCTCCACGCACCGTGCACCCCCTGCGCTGCTCACCCGAGTCCCCTCGGGAGGCCCCTCCAGGTACTCCGGGGGTGCCGGGAGACACCTCCTGTACCTGGGCCGGCCTGAGGGGCACCGGGGCCGCGCCCTAAAGAGGGTGGACGTCGAGAAGCCCCAGGTGCCCCTGAAGCCTCCCCTCGTCGGGCCTTCCTCGCAGCCGGCCGTCCCTAGTGGCAACCATTTTAACTTTTAA

Related Sequences

bmy_11127T0 Protein

Length: 966 aa      View alignments
>bmy_11127T0
MPRAPRFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPLSWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLTWRSQDMENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGVQRRGRGIRTGVGEEPKLGNQFSGDGPAGITSLQQEGEELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDVLTFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPYSNTTVLFLGSNDGTVLKVLPPWGQSGGPEPILLEEIDAYSPSRCSGKRAAQTARRVIGLELDTEGHRLFVAFSGCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGIDVHPAGNQESMEHDDCQDGATGSQSGTGDSAYGVRRDLPPDSVSRSVPIPLLLACVAAAFALGASVSGLLVSCACRRAHRRRSKDIETAGLPRPLSLRSLARLHGAGPEPQPTSKDGEGAQTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRHAGCPWEWNQNGNNAKEGRGRARGGNTAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEAEPPAAAPFTSRALPPEPAPAPTPTLFAGPSLLPRDCATPRRLDVPPEGKRPAPATRPAVSAPAPRLGVGGSRRLPFSTHRAPPALLTRVPSGGPSRYSGGAGRHLLYLGRPEGHRGRALKRVDVEKPQVPLKPPLVGPSSQPAVPSGNHFNF*