Sequence detailsbmy_11127 (Coding sequence)

Part of scaffold_592 (SequenceType object (1))

For more information consult the page for scaffold_592 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEMA6CENSTTRG00000007007 (Bottlenosed dolphin)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000006626, Bottlenosed dolphin)

Protein Percentage 98.61%
cDNA percentage 98.47%
Ka/Ks Ratio 0.15913 (Ka = 0.0065, Ks = 0.0407)

SEMA6CENSBTAG00000007281 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000009575, Cow)

Protein Percentage 94.6%
cDNA percentage 93.56%
Ka/Ks Ratio 0.16117 (Ka = 0.0297, Ks = 0.1843)

SEMA6C (Minke Whale)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C

External Links

Gene match (Identifier: BACU007242, Minke Whale)

Protein Percentage 99.16%
cDNA percentage 99.34%
Ka/Ks Ratio 0.30994 (Ka = 0.004, Ks = 0.013)

Additional orthologs identified in other species via the OPTIC pipeline.

SEMA6C (Human)   Sema6c (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2898 bp    Location:204906..217597   Strand:+
Raw sequence 
>bmy_11127
ATGCCCCGTGCCCCCCGCTTCATGCCCTTGCTGCTACTGCTGTTGCTGCTGTCACTTCCCCACACCCAGGCTGCCTTTCCCCAGGACCCCCTCCCTCTGCTGACCTCTGACCTGCAAGGTATTTCCCCATTATCCTGGTTCCGGGGCCTGGAGGATGATGCTGTGGTGGCAGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTAGTGGCTGCCCGGGATCACGTTTTCTCCTTCGATCTTCAAGCCCAAGAAGAAGGGGAGGGGCTAGTGCCCAACAAGTATCTAACATGGAGGAGTCAAGACATGGAGAACTGTGCCGTGCGGGGGAAGCTGACGGACGAGTGCTACAACTACATTCGTGTTCTCGTTCCCTGGGACTCCCAGACACTCCTTGCCTGTGGAACGAACTCATTCAGCCCCGTGTGCCGCAGCTATGGGGTACAAAGGCGAGGGCGGGGCATCAGGACTGGAGTGGGAGAAGAACCCAAGCTGGGCAATCAGTTCAGTGGGGATGGACCAGCAGGGATAACTTCGCTGCAGCAGGAGGGTGAGGAGCTGAGTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCAACGTGGCCGTCTTTGCAGAGGGCAGCCTGTATTCAGCCACAGCCGCGGATTTCCAGGCCAGTGACGCTGTGGTTTACAGAAGCCTTGGGCCTCAGCCCCCACTCCGCTCCGCCAAGTACGACTCCAAGTGGCTCCGAGAGCCACACTTTGTCCACGCTTTGGAGCATGGAGACCATGTCTACTTCTTCTTCCGAGAAGTCTCTGTGGAGGACGCCCGGCTGGGGAGGGTACAGTTCTCCCGTGTGGCCCGTGTGTGTAAGCGTGACATGGGCGGCTCACCTCGGGCCTTGGACCGCCACTGGACATCCTTCCTGAAGCTGCGGCTCAACTGCTCTGTCCCTGGGGACTCTACCTTCTATTTTGACGTCTTACAGGCCTTGACAGGGCCTGTGAACTTGTATGGCCGCTCTGCTCTCTTTGGGGTCTTCACCACCCAGACCAATAGCATCCCCGGCTCTGCGGTCTGTGCCTTCTACCTGGATGATATTGAGCGTGGGTTTGAGGGAAAGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACCCCTGTGTCTGAGGACAGGGTCCCCTCCCCCAGGCCAGGATCCTGTGCAGGAGTAGGTGTAGCTGCATTGTTCCCCTCTTCTCGAGACCTCCCTGATGATGTCCTGACCTTCATCAAGGCTCACCCACTCCTGGACCCTGCCGTGCCGCCTGCCACCCATCAGCCTCTGCTCACCCTCACCAGCAGGGCCCTACTGACCCAGGTAGCTGTGGATGGCATGGCTGGTCCCTACAGTAATACCACAGTCCTGTTCCTTGGCTCCAACGATGGGACAGTGCTGAAGGTGCTGCCCCCATGGGGGCAATCTGGGGGCCCTGAGCCCATTCTGTTGGAAGAGATCGATGCCTACAGCCCCTCCCGGTGCAGTGGGAAGCGGGCAGCCCAAACAGCACGGCGGGTCATAGGGCTGGAGCTGGACACTGAAGGTCACAGGCTCTTTGTGGCTTTTTCTGGCTGTATCATCTACCTCCCTCTCAGTCGATGTGCCCGGCATGGGGCCTGTCGGAGGAGCTGTCTGGCTTCTCAGGACCCATACTGTGGATGGGATAGCTCCAGAGGCTGTGTGGATATCAGGGGACCTGGTGGGATTGATGTGCATCCAGCTGGGAACCAGGAATCCATGGAGCATGATGACTGCCAAGATGGAGCTACTGGGAGTCAGTCTGGCACAGGGGATTCTGCTTATGGCGTGCGACGGGACCTCCCGCCAGACTCAGTCTCCCGCTCCGTCCCCATCCCACTCCTCCTGGCCTGTGTGGCCGCAGCCTTCGCCCTGGGCGCCTCGGTCTCTGGCCTCCTGGTCTCCTGCGCTTGTCGCCGCGCCCACAGACGTCGGAGCAAGGATATCGAGACTGCGGGGCTCCCGCGCCCTCTCTCCCTTCGCAGCTTGGCCCGTCTGCACGGGGCGGGCCCAGAGCCGCAGCCAACGTCCAAGGACGGAGAGGGGGCACAGACACCCCAGCTTTACACCACCTTCCTGCCTCCTCCCGAGGGCGTACCCCCGCCGGAGCTGGCCTGCCTGCCCACCCCGGAGTCCACGCCGGAGCTGCCGGTCAAGCACCTCCGCCACGCCGGGTGTCCCTGGGAGTGGAACCAGAACGGGAACAACGCCAAGGAGGGCCGGGGCCGCGCCCGGGGCGGCAACACGGCGGGCGGCCCCGCGCCGCGCGTGCTGGTGAGGCCGCCGCCGCCCGGCTGTCCCGGGCAAGCCGTGGAAGTCACCACCCTCGAGGAACTGCTGCGCTACCTGCACGGCCCGCAGCCGCCCAGGAAGGAGGCCGAGCCCCCGGCCGCCGCCCCTTTCACCTCGCGGGCGCTGCCGCCCGAGCCCGCCCCCGCCCCCACCCCCACCCTCTTTGCCGGCCCCAGCCTGCTACCCCGGGACTGTGCCACGCCTCGGAGGCTGGACGTGCCCCCGGAGGGCAAGCGCCCGGCCCCCGCCACCCGGCCTGCTGTCTCCGCCCCAGCTCCCCGGCTCGGGGTGGGCGGCAGCCGGAGGTTGCCCTTCTCCACGCACCGTGCACCCCCTGCGCTGCTCACCCGAGTCCCCTCGGGAGGCCCCTCCAGGTACTCCGGGGGTGCCGGGAGACACCTCCTGTACCTGGGCCGGCCTGAGGGGCACCGGGGCCGCGCCCTAAAGAGGGTGGACGTCGAGAAGCCCCAGGTGCCCCTGAAGCCTCCCCTCGTCGGGCCTTCCTCGCAGCCGGCCGTCCCTAGTGGCAACCATTTTAACTTTTAA

Related Sequences

bmy_11127T0 SequenceType object (3)

Length: 966 aa      View alignments
>bmy_11127T0
MPRAPRFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPLSWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLTWRSQDMENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGVQRRGRGIRTGVGEEPKLGNQFSGDGPAGITSLQQEGEELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDVLTFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPYSNTTVLFLGSNDGTVLKVLPPWGQSGGPEPILLEEIDAYSPSRCSGKRAAQTARRVIGLELDTEGHRLFVAFSGCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGIDVHPAGNQESMEHDDCQDGATGSQSGTGDSAYGVRRDLPPDSVSRSVPIPLLLACVAAAFALGASVSGLLVSCACRRAHRRRSKDIETAGLPRPLSLRSLARLHGAGPEPQPTSKDGEGAQTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRHAGCPWEWNQNGNNAKEGRGRARGGNTAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEAEPPAAAPFTSRALPPEPAPAPTPTLFAGPSLLPRDCATPRRLDVPPEGKRPAPATRPAVSAPAPRLGVGGSRRLPFSTHRAPPALLTRVPSGGPSRYSGGAGRHLLYLGRPEGHRGRALKRVDVEKPQVPLKPPLVGPSSQPAVPSGNHFNF*