Sequence detailsbmy_11151 (Coding sequence)

Part of scaffold_592 (SequenceType object (1))

For more information consult the page for scaffold_592 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRPF3ENSTTRG00000010616 (Bottlenosed dolphin)

Gene Details

pre-mRNA processing factor 3

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000010063, Bottlenosed dolphin)

Protein Percentage 91.42%
cDNA percentage 91.59%
Ka/Ks Ratio 0.40052 (Ka = 0.0174, Ks = 0.0434)

BT.60840ENSBTAG00000013946 (Cow)

Gene Details

U4/U6 small nuclear ribonucleoprotein Prp3

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000018533, Cow)

Protein Percentage 98.39%
cDNA percentage 96.18%
Ka/Ks Ratio 0.09951 (Ka = 0.0122, Ks = 0.1221)

PRPF3 (Minke Whale)

Gene Details

pre-mRNA processing factor 3

External Links

Gene match (Identifier: BACU007224, Minke Whale)

Protein Percentage 98.31%
cDNA percentage 98.25%
Ka/Ks Ratio 0.41699 (Ka = 0.0132, Ks = 0.0316)

Additional orthologs identified in other species via the OPTIC pipeline.

PRPF3 (Human)   Prpf3 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1923 bp    Location:818963..799568   Strand:-
Raw sequence 
>bmy_11151
ATGGCATTGTCTAAGAGGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACAGTGAAGAGGGTGCTGGGTTTCTCAGAGCCCACAGTGGTCACAGCAGCACTGAACTGTGTGGGGAAGGGCATGGACAAGAAGAAGGCAGCTGACCATCTGAAACCTTTTCTTGATGATTCTACTCTCCGATTTGTGGACAAACTGTTTGAGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAGTCCAGCAGTGACAGGAGCAGAAAACGAGAGCTAAAGGAAGTGTTTGGTGATGACTCTGAGATCTCCAAGGAATCATCAGGAGTAAAAAAGCGACGGATACCCCGTTTTGAGGAGGTGGAAGAGGAGCCAGAAGTAATCCCTGGGCCTCCCTCAGAGAGTCCTGGCATGCTGACTAAGCTTCAGATCAAACAGATGATGGAGGCAGCAACACGGCAAATCGAGGAAAGGAAAAAACAACTAAGTTTCATTAGTCCCCCTACGCCTCAGCCAAAGACTCCTTCTTCCTCCCAACCAGAGCGACTTCCAATTGGCAACACTATTCAGCCCTCCCAGGCCGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTACAAGCCCGCATCCAAGCCCAGCTGGCACTGAAGCCAGGGCTCATCGGCAATGCCAACATGGTGGGCCTGGCCAATCTCCATGCTATGGGCATTGCTCCCCCGAAGGTGGAGTTAAAAGATCAAACTAAACCTACACCACTGATTCTTGATGAACAAGGTCGAACTGTAGATGCAACCGGCAAGGAAATTGAGCTGACACACCGTATGCCTACTCTGAAGGCCAATATTCGGGCTGTGAAGAGGGAACAATTCAAGCAACAGCTAAAAGAAAAGCCATCAGAAGACATGGAGTCTAATACCTTTTTTGACCCCCGAGTCTCAATTGCCCCTTCCCAGCGCCAGAGACGCACTTTTAAATTCCACGACAAGGGCAAATTTGAAAAGATTGCCCAGCGATTACGGACAAAGGCTCAACTGGAGAAGCTGCAGGCAGAGATCTCACAGGCAGCTCGAAAAACAGGCATTCATACTTCAACTAGGCTGGCCCTCATTGCTCCTAAGAAGGAGTTGAAGGAAGGTGATATCCCTGAAATTGAGTGGTGGGACTCTTACATCATCCCCAATGGCTTTGACCTTTTACAAAACCTCACTCCTGTAGTTTCCATTATCATAAGAATTTCAAATTTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCATGTCAGAGCTCAGATGGCAAAAAGACAGAAAGCGCATGAAGAGGCCAACGCTGCCCGAAAACTTACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTACACATATCTGTTTATAGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAGGCCAATGCTGGGCAGCTGTACCTGACAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACAAAGGGAGATGGTGAATGGGGTCTAGAGCACGATTTAGCTGTATTGTCTTTTCCAGATGATGAGGAATCTGACGAGGAAGCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGTTGCATGCGCGTGTGGTACAGCCAAAGACCGGAGCTTTGGGGAGATGAAGTTCAAACAGTGCCCTACAGAGAACATGGCTCGGGAGCATTTCAAAAAGCATGGGGCTGAGCACTACTGGGACCTTGCGCTGAGTGAATCTGTGTTGGAGTCCACCGACTGA

Related Sequences

bmy_11151T0 SequenceType object (3)

Length: 641 aa      View alignments
>bmy_11151T0
MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLLQNLTPVVSIIIRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDGEWGLEHDLAVLSFPDDEESDEEAVKKTNKCVLVWEVACACGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLESTD*