Sequence details bmy_11173 (Coding sequence)

Part of scaffold_602 (Scaffold)

For more information consult the page for scaffold_602 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CHML ENSBTAG00000010803 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014310, Cow)

Protein Percentage 88.48%
cDNA percentage 91.6%
Ka/Ks Ratio 0.29377 (Ka = 0.0582, Ks = 0.1982)

CHML  (Minke Whale)

Gene Details

choroideremia-like (Rab escort protein 2)

External Links

Gene match (Identifier: BACU009608, Minke Whale)

Protein Percentage 98.77%
cDNA percentage 98.92%
Ka/Ks Ratio 0.29694 (Ka = 0.0061, Ks = 0.0204)

Additional orthologs identified in other species via the OPTIC pipeline.

CHML (Human)   Chml (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1956 bp    Location:797848..799803   Strand:+
Raw sequence 
>bmy_11173
ATGGACAACAGTCTCCCAACAGAGTTTGATGTGGTTGTAATAGGGACGGGTTTGCCTGAATCCATCCTTGCAGCTGCATGTTCCAGAAGTGGTCAGAGGGTTCTGCATCTTGATTCAAGAAGTTACTATGGAGGAAACTGGGCTAGTTTCAGCTTTTCAGGATTGCTCTCCTGGTTGAAGGAATATCAGCAAAACAGTGACATTGGGGAAGAAAGTACTGCTGCATGGCAAGACATAATCCATGAAACAGAAGAAGGCATCACTCTTCGCAAGAAGGATGAAACCATTCAACACACGGAAGTTTTTTGTTATGCCAGTCAGGATATAGATGACAATATTGAAGAGATTGGTGATCTGCAGAAGAATCCTTCCTGGGTAGCATCTAGTACCCTCATTAAACCTCTGGATTCTGCATGCTTGTCTGAAGAAATGCACTCATTATATGTTTCTAGCTATGAAGTGCCTGCAAAAGGCACTCCAGAAAACAATGGAGAAGTAACTGATACAGCAGAAACCTTGGTGAAAGAAGAATATTGTGGATATAAAACTTATAAACACAGAGTTTCAGATGGTGCTAAAGACGAAATCAAACCTATATTGGAAGACAACAGYGATCCACCAAAGAGAAACAGGATTACTTACTCTCAAATAGTTGAAGAAGGCAGGAGGTTTAATATTGATTTGGTATCAAAGCTGCTTTATTCCCAAGGACTGTTAATTGATCTTTTAATCAAATCAAATGTTAGTCGTTATGCAGAATTTAAAAATGTCACTAGGATTCTTGCATTTCGAGAAGGAAAAGTAGAGCAGGTGCCTTGCTCCAGAGCAGATGTCTTTAATAGCAAAGAGCTCACTATGGTTGAAAAGAGGATGCTAATGAAATTTCTTACATTTTGTTTAGACTACGAACAATATCCTGATGAATACCAAGCTTTCACGCAATGCTCATTTTCAGAGTACTTGAAAACCAAAAAGTTAACCCCCAGCCTCCAACATTTTGTACTACACTCAATTGCAATGATGTCAGAGTCATCTTGCACAACAATAGAAGGCCTTAAAGCAACAAAAAACTTTCTTCAGTGTCTTGGAAGGTTTGGCAACACTCCCTTTTTATTTCCCTTGTATGGCCAAGGAGAAATTCCCCAGTGTTTCTGCAGGATGTGTGCAGTTTTGGGTGGAACATATTGTCTTCGCCATAAAGTACAATGCCTTGTAGTTGACAAAGAATCAGGAAGATGTAAAGCAATTATAGATCACCTTGGTCAAAGAATAAATGCTAAATATTTCATTGTGGAGGATAGTTACCTTTCTGAGGAAACATGCTCAAATGTGCAGTACGAGCAGATCTCCAGGGCAGTGCTCATTACGGATCAGTCTATACTAAAGACAGATTCAGATCAGCAGATTTCCATTTTGATAGTACCTCCAGTGGAACCAGGAGCATGTGCTGTTCGAGTCACTGAATTGTGTTCTTCAACCATGACGTGCATGAAAGACACCTGTCTGGTACATCTGACCTGTTCATCTTCCAAAACAGCAAGAGAAGACTTAGAATCAGTGGTGAAGAAATTATTCACCCCGTATGCTGAAACAGAAATAGACAAGGAAGAACTTGCAAAGCCAAGACTCTTGTGGGCTCTTTATTTTAACATGAGAGATTCCTCAGGAGTCAGCAGAAGCTCATATAATGGCTTACCTTCCAATGTTTATGTCTGCACTGGGCCTGACTGTGGACTAGGAAATGAACACGCAGTGAAGCAAGCTGAAACACTCTTCAGGGAGATCTTTCCAAGTGAAGAATTCTGCCCCCCACCTCCAAATCCAGAAGATGTTTTCTTTGATGGTGATGATAAGCAACCAGAACCTCTTGGAGCCAATACTATAATAATAGCCCAACTAGAATCMTCTGAGGGAAGCAAAAACCTAGAAAGCTCAGAGAAGCACCTTCAAAATTAG

Related Sequences

bmy_11173T0 Protein

Length: 652 aa      View alignments
>bmy_11173T0
MDNSLPTEFDVVVIGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFSFSGLLSWLKEYQQNSDIGEESTAAWQDIIHETEEGITLRKKDETIQHTEVFCYASQDIDDNIEEIGDLQKNPSWVASSTLIKPLDSACLSEEMHSLYVSSYEVPAKGTPENNGEVTDTAETLVKEEYCGYKTYKHRVSDGAKDEIKPILEDNSDPPKRNRITYSQIVEEGRRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLDYEQYPDEYQAFTQCSFSEYLKTKKLTPSLQHFVLHSIAMMSESSCTTIEGLKATKNFLQCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVLGGTYCLRHKVQCLVVDKESGRCKAIIDHLGQRINAKYFIVEDSYLSEETCSNVQYEQISRAVLITDQSILKTDSDQQISILIVPPVEPGACAVRVTELCSSTMTCMKDTCLVHLTCSSSKTAREDLESVVKKLFTPYAETEIDKEELAKPRLLWALYFNMRDSSGVSRSSYNGLPSNVYVCTGPDCGLGNEHAVKQAETLFREIFPSEEFCPPPPNPEDVFFDGDDKQPEPLGANTIIIAQLESSEGSKNLESSEKHLQN*