Part of scaffold_615 (Scaffold)

For more information consult the page for scaffold_615 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDH18 ENSTTRG00000002732 (Bottlenosed dolphin)

Gene Details

protocadherin 18

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002561, Bottlenosed dolphin)

Protein Percentage 98.31%
cDNA percentage 97.1%
Ka/Ks Ratio 0.10172 (Ka = 0.0095, Ks = 0.0932)

BT.69526 ENSBTAG00000015549 (Cow)

Gene Details

protocadherin-18 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020655, Cow)

Protein Percentage 97.01%
cDNA percentage 94.89%
Ka/Ks Ratio 0.09211 (Ka = 0.0161, Ks = 0.1753)

PCDH18  (Minke Whale)

Gene Details

protocadherin 18

External Links

Gene match (Identifier: BACU004171, Minke Whale)

Protein Percentage 73.16%
cDNA percentage 78.18%
Ka/Ks Ratio 0.60077 (Ka = 0.2327, Ks = 0.3873)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2508 bp    Location:365505..379289   Strand:+
>bmy_11178
ATGAATGCTAAAATGCACTTTAGATTTGTTTTTGCACTCCTGGTGGTATCTTTCAACTCCGAGGTACTGGGCAAGAATTTGAAATACAGGATTTATGAGGAGCAGAGGGTTGGATCGGTAATTGCAAGATTATCAGAGGATGTGGCTGATATTTTAGTTAAGCTACCTAATCCTTCTACTGTTCGCTTCCGAGCCATGCAAAGGGGAAATTCTCCTCTACTCGTGGTCAACGAGGATAGCGGGGAAATCAGCATAGGGGCAAAAATTGACCGCGAACAACTATGCCAGAAAAACTTGAACTGTTCCATAGAGTTTGATGTGATCACTCTACCCACTGAGCATCTGCAGCTTTTCCATATTGAAGTTGAAGTGCTGGATATTAATGACAATTCTCCCCAGTTTTCAAGACCTCTCATACCGATTGAGATATCAGAGAGTGCAGCAGTTGGGACTCGTATCCCTCTGGACAGTGCATTTGATCCGGATGTTGGGGAAAATTCCCTCCACACGTACTCTCTCTCTGCCAATGATTTTTTTAATATCGAGGTTCGGACTAGGACTGATGGAGCTAAGTATGCAGAACTCATAGTGGTCAGAGAGCTGGATCGGGAGCTGAAGTCAAGCTATGAGCTCCAGCTCACCGCCTCGGACATGGGGGTGCCTCAAAGGTCTGGCTCATCCATACTAAAAATCAGCATTTCTGACTCTAATGACAACAGCCCTGCTTTTGAGCAGCAGTCTTATATAATACAGCTCTTAGAAAACTCCCCCATTGGCACTTTGCTGCTAGATCTGAATGCCACTGATCCAGATGAGGGCGCTAATGGGAAAATCGTCTATTCCTTCAGCAGTCATGTGTCTCCCAAAATTATAGAGACTTTTAAGATTGATTCAGAAAGAGGACATTTGACTCTTTTCAAGCAAGTGGATTATGAAATCACCAAATCCTATGAGATTGATGTTCAGGCTCAGGATTTGGGTCCAAATTCAATCCCAGCTCACTGCAAAATTATAATTAAGGTTGTGGATGTTAATGACAATAAGCCTGAAATTAACATAAACCTCATGTCCCCTGGAAAAGAAGAAATATCTTATATTTTTGAAGGGGATCCTATTGACACATTTGTTGCCTTGGTCAGGGTTCAGGACAAGGATTCTGGGCTGAATGGAGAAATAGTTTGTAGGCTTCACGGACATGGTCACTTTAAACTTCAGAAGACTTACGAAAACAATTATTTAATCTTGACAAATGCCACGCTGGATAGAGAAAAGAGGTCTGAATATAGTTTGACTGTAATCGCTGAGGACAAGGGGACACCCAGTCTCTCAACAATAAAACATTTTACTGTTCAAATCAATGATGTAAATGACAATCCACCCCACTTCCAGAGAAGTCGATACGAATTTGCAATCTCAGAGAATAACTCGCCAGGGGCATATATCACCACTGTCACAGCCACAGATCCTGATCTTGGAGAGAATGGGCAAGTTACATATACCATGTTGGAGAGTTTTATCCTGGGAAGTTCCATAACTACATATGTAACCATTGACCCATCTAATGGAGCCATCTATGCCCTCAGAATCTTTGATCATGAGGAAGTGAGTCAGATCACTTTCGTGGTAGAAGCCAGAGATGGTGGAAGTCCAAAGCAACTTGTAAGCAATACCACAGTTGTACTCACCATCATTGACGAAAATGACAACATCCCTGTGGTTATAGGACCAGCACTGCGCAATAATACCGCAGAAATCTCCATCCCCAAAGGGGCTGAAAGCGGCTTTCATGTCACAAGAATAAGGGCAATGGACAGAGACTCTGGTGTGAATGCTGAACTCAGCTGCTCCATAGTAGCAGGTAATGAGGAGAATATCTTCGTAATTGATCCACGATCATGTGACATCCATACCAACGTCAGCATGGAATCTGTTCCCTACACAGAATGGGAGCTCTCAGTTGTCATCCAGGACAAAGGCAATCCTCAGCTGCATACCAAAGTCCTTCTGAAGTGTATGATCTTTGAATATGCAGAGTCAGTGACAAGTACAGCCATGACCTCAGTAAGCCAGGCATCCTTGGATGTCTCCATGATTATAATTATTTCCTTAGGAGCAATTTGTGCAGTGTTGTTGGTTATTATGGTGCTGTTTGCAACTAGGTGTAACCGAGAAAAGAAAGACACTAGATCCTACAACTGCAGGGTAGCGGAATCAACTTACCAGCATCACCCAAAAAGACCCTCCAGGCAGATCCACAAAGGGGACATCACATTGGTGCCTACCGTAAACGGCACTCTGCCCATCAGATCTCATCACAGACCGTCTCCTTCTTCATCTCCTACCTTAGAAAGAGGGCAAATGGGCAGCCGGCAGAGTCACAACAGTCACCAGTCCCTCAACAGTTTGGTGACAATCTCATCGAACCACGTGCCAGAGAATTTCTCATTAGAACTCACCCATGCCACCCCTGCTGTTGAGGTAAGATCATACCCTCCACCTATTCACTGA

Related Sequences

bmy_11178T0 Protein

Length: 836 aa      View alignments
>bmy_11178T0
MNAKMHFRFVFALLVVSFNSEVLGKNLKYRIYEEQRVGSVIARLSEDVADILVKLPNPSTVRFRAMQRGNSPLLVVNEDSGEISIGAKIDREQLCQKNLNCSIEFDVITLPTEHLQLFHIEVEVLDINDNSPQFSRPLIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSANDFFNIEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDMGVPQRSGSSILKISISDSNDNSPAFEQQSYIIQLLENSPIGTLLLDLNATDPDEGANGKIVYSFSSHVSPKIIETFKIDSERGHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEININLMSPGKEEISYIFEGDPIDTFVALVRVQDKDSGLNGEIVCRLHGHGHFKLQKTYENNYLILTNATLDREKRSEYSLTVIAEDKGTPSLSTIKHFTVQINDVNDNPPHFQRSRYEFAISENNSPGAYITTVTATDPDLGENGQVTYTMLESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQITFVVEARDGGSPKQLVSNTTVVLTIIDENDNIPVVIGPALRNNTAEISIPKGAESGFHVTRIRAMDRDSGVNAELSCSIVAGNEENIFVIDPRSCDIHTNVSMESVPYTEWELSVVIQDKGNPQLHTKVLLKCMIFEYAESVTSTAMTSVSQASLDVSMIIIISLGAICAVLLVIMVLFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTVNGTLPIRSHHRPSPSSSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEVRSYPPPIH*