Part of scaffold_612 (Scaffold)

For more information consult the page for scaffold_612 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TREM1 ENSTTRG00000013132 (Bottlenosed dolphin)

Gene Details

triggering receptor expressed on myeloid cells 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012460, Bottlenosed dolphin)

Protein Percentage 86.34%
cDNA percentage 91.51%
Ka/Ks Ratio 0.89396 (Ka = 0.0862, Ks = 0.0964)

TREM1 ENSBTAG00000017593 (Cow)

Gene Details

triggering receptor expressed on myeloid cells 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023397, Cow)

Protein Percentage 65.32%
cDNA percentage 77.46%
Ka/Ks Ratio 1.17974 (Ka = 0.2993, Ks = 0.2537)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 765 bp    Location:731529..718166   Strand:-
>bmy_11334
ATGGCCCCGGAAGCCTCACACCTGCTGCTGGTCCTGCTGGTGCTCCTGGCCGCGGGCGAGGAGACAGTTGAAGGGGCAAAAGGAGTCTCCACTTCCAAGCCCAGGACATTGGCCCAGGACTCTCGCTACACGATCCGGGATGACCCTAGCTCTGGCTTCACTAATGTCACCATGGCTGAGCTCAAAGAGAAGGATTCAGGAAGCTACCAGTGTGCAACCAAGGGTTCCAAAGGTGGCGCCATTCTGTACAAGAAAATCCACCTGCTGGAGTTCCCAGAAATCCAAGCTGCATCTGAACTACCCGAGGAAAAGTGTACTCTAGCAGAGGGGCAGACCTTGAAAGTGGGCTGTCCCGTCACCCACGACACGGATTCCAACAGCTGGAAGGCTTGGCAGAGTCTGAAAGATAAAGGGGAGGTCCAGACGCTGGCAATCACAGAGAGAGTCTCGGGGGAGTTCAGTCAAGTCCAGGTGGGGAGGTACTTCCTGAAAGATGTCCCCAGTGAGAGCATGCTGCACGTCCGAATGACCAACCTTCGAGTGGAGGACACAGGACTGTACCGATGTGTGACCTACCAGCTTCCCAAGGACCCCGTCATCCTGTTCTACCCTGTCTACCTGGTGGACCAAGACAGCACTGAATCTCCTCTCTTCCCCAGGGCCCCTGGGACCCGCATTGCCATTCCCGTGGCAYGTGGACTCCTGAGTAAGAGCCTGGTCTTCATTGCTCTGTTTGCTGTCACGCAGAGGTCATTTGCATCCTAG

Related Sequences

bmy_11334T0 Protein

Length: 255 aa      View alignments
>bmy_11334T0
MAPEASHLLLVLLVLLAAGEETVEGAKGVSTSKPRTLAQDSRYTIRDDPSSGFTNVTMAELKEKDSGSYQCATKGSKGGAILYKKIHLLEFPEIQAASELPEEKCTLAEGQTLKVGCPVTHDTDSNSWKAWQSLKDKGEVQTLAITERVSGEFSQVQVGRYFLKDVPSESMLHVRMTNLRVEDTGLYRCVTYQLPKDPVILFYPVYLVDQDSTESPLFPRAPGTRIAIPVAXGLLSKSLVFIALFAVTQRSFAS*