Sequence detailsbmy_11378 (Coding sequence)

Part of scaffold_613 (SequenceType object (1))

For more information consult the page for scaffold_613 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HIGD1BENSTTRG00000006197 (Bottlenosed dolphin)

Gene Details

HIG1 hypoxia inducible domain family, member 1B

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000005855, Bottlenosed dolphin)

Protein Percentage 88.46%
cDNA percentage 95.3%
Ka/Ks Ratio 2.82591 (Ka = 0.0494, Ks = 0.0175)

HIGD1BENSBTAG00000016736 (Cow)

Gene Details

HIG1 domain family member 1B

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000022251, Cow)

Protein Percentage 81.82%
cDNA percentage 88.22%
Ka/Ks Ratio 0.30793 (Ka = 0.0857, Ks = 0.2784)

HIGD1B (Minke Whale)

Gene Details

HIG1 hypoxia inducible domain family, member 1B

External Links

Gene match (Identifier: BACU008417, Minke Whale)

Protein Percentage 90.91%
cDNA percentage 96.97%
Ka/Ks Ratio 99.0 (Ka = 0.0323, Ks = 0.0003)

Additional orthologs identified in other species via the OPTIC pipeline.

HIGD1B (Human)   Higd1b (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 426 bp    Location:516915..515234   Strand:-
Raw sequence 
>bmy_11378
ATGTCTGCTAACAAAGGCTCGKGGGCACCACCTGAGGGTGAGGACAGCATGTCTGAGAAGTTCCTGAGGAAGACCAGGGAGYCTCTGCTGGTGCCTATAGGCTTAGGGGGCTATGTGGTGGTGGCAGCATGCAAGATTTACCGGCTGAAGGCTCGTGGTTCCACCAAGATGTCCACACACCTGATTCACACCCGAGTGGAAGCACAGGCCTGTGCTGTGGGTGCGATCATGCTGGGTGCTTTGTACACGATGTACAGAGACTACATCAAGAGAACCGCGCAGGATGCTGCGGAGAAGCAGGACTCCTGCAGGCCTGGGGCAGTCAGACCTCTTCGATCAACCCCTGATATGCACCTAATAAAGGAGTCTGAGGCAAATCAACAGTCTCTTCTTCACACAGACGAGAGCAGCATAAGGGATTGGTAG

Related Sequences

bmy_11378T0 SequenceType object (3)

Length: 142 aa      View alignments
>bmy_11378T0
MSANKGSXAPPEGEDSMSEKFLRKTREXLLVPIGLGGYVVVAACKIYRLKARGSTKMSTHLIHTRVEAQACAVGAIMLGALYTMYRDYIKRTAQDAAEKQDSCRPGAVRPLRSTPDMHLIKESEANQQSLLHTDESSIRDW*