Part of scaffold_622 (Scaffold)

For more information consult the page for scaffold_622 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RRP12 ENSTTRG00000009878 (Bottlenosed dolphin)

Gene Details

ribosomal RNA processing 12 homolog (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009371, Bottlenosed dolphin)

Protein Percentage 94.72%
cDNA percentage 95.44%
Ka/Ks Ratio 0.22608 (Ka = 0.0157, Ks = 0.0694)

RRP12 ENSBTAG00000002191 (Cow)

Gene Details

RRP12-like protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002844, Cow)

Protein Percentage 94.81%
cDNA percentage 92.86%
Ka/Ks Ratio 0.075 (Ka = 0.0231, Ks = 0.3078)

RRP12  (Minke Whale)

Gene Details

ribosomal RNA processing 12 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU012436, Minke Whale)

Protein Percentage 98.94%
cDNA percentage 98.71%
Ka/Ks Ratio 0.12496 (Ka = 0.0053, Ks = 0.0424)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4194 bp    Location:581382..553207   Strand:-
>bmy_11417
ATGGGTCGTTCGGGGAAGTTGCCCTCCGGGGTCTCGGCCAAGTTGAAACGCTGGAAGAAAGGCCACAGCAGCGACAGCAACCCGGCCATCTCCCGCCACCGCCAGGCCGCCCGCAGCCGCTTCTTCAGCCGGCCCTCAGGAAAGAGCGACTTGACAGTTGATGCGGTAAAGTTGCATAATGAGCTGCAGTCAGGATCCCTGCGTCTGGGTAAAAGCGAAGCCCCTGAGACTGCCATGGAAGAGGAAGAGGTGGCGCCAGCTCTCACCGAGAAGTCCTCCGGCACCTTCCTGAGCGGCCTCTCCGACTGCACAAACGTCACCTTCAGCAAAGTGCAGCGCTTCTGGGAGTCCAGCTCGGCTGCCCACAAGGAGATCTGTGCTGTCTTGGCTGCTGTCACCGAGGTGATACGCTCCCAGGGTGGGAAGGAGACAGAGACTGAGTACTTTGCTGCCCTGATGACAACAATGGAAGCGGTGGAGTCCGCGGAGTCTCTGGCCGCTGTTGCTTACCTGCTGAACCTCGTCCTGAAGCGCGTGCCCAGCCCTGTGCTCATTAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGATATCATGTCAACCCAGGCCAGCAGTGGCTCCACCTCTGCCCTCCGATGGGTCCTCTCCTGCCTGGCCACCCTTCTGCGGAAGCAGGACCTGGAGGCCTGGAGCTACCCCGTGACCCTGCAGGTGTACCATGGGCTGCTGAGCTTCACTGTGCACACGAAGCCCAAGATCCGGAAGGCTGCCCAGCATGGAGTGTGCTCCGTCCTCAAGGGCAGTGAATTCATGTTTGGTGAAAAGGCCCCTGCCCATCACCCTGCTGCCATGTCCACCGCCAAGTTCTGCATCCAGGAGATCGAGAAGTCTGGAGGCTCCAAGGAGGCCACCACCACGCTGCACATGCTGACCCTGCTGAAGGACCTGCTGCCCTGCTTCCCGGACGGCCTCGTGAAGAGCTGCAGTGAGACTCTCCTCCGGGTCATGACCTTGAGCCACGTGCTGGTGACAGCCTGTGCCATGCAGGCCTTTCACAGCCTCTTCCATGCCAAGCCCAGCCYGGGTACCCTGCCAGCAGAGCTCAACGCCCAGATCATCACGGCCTTGTATGACTACGTTCCCAGCGAGAATGACTTACAACCCCTGCTGGCCTGGCTGAAGGTCATGGAGAAAGCCCACATCAACCTGGTTAGGCTGCATCGGGACCTGGGGCTGGGCCACCTCCCTCGCTTTTTTGGAACTGCGACGACCTGCCTCCTCTCCCCCCACTCGCAGGTGGTGACAGCTGCCACCCAGTGCCTTCAGGAGATCCTGAAGGAGTGTGTCGCTCCCCACATGGCTGACATCGGCTCCGTGACCTCCTCGGCCTCAGGCCCTGCACAGTATGTCGCCAAGATGTTCAGGGCAGTGGAGGAGGGCCTGACGTACAGATTCCACGCATCATGGAGCTCCGTGCTGCAGCTGCTGTGTGTCTTCTTCGAGGCGTGTGGGAGACAGGCCCATCCTGTGATGAGGAAGTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCCCCCTACTCCCCCCGCACGGCAGCTGTGGACCGCGCAGTGGGCGCTGCCGTGGCCAGCATGGGCCCCGAGGTGGTTTTAGAGGCTGTGCCTTTGGAAATTGATGGCTCTGAAGAGACTCTGGATTTCCCTCGGAGCTGGCTGCTGCCCGTCGTCCGAGACCACGTCCGGGAAACTCGACTTGGTTTCTTTACCGCTTACTTCCTGCCTCTGGCTACCACCCTGAAGAGGAAAGCAATGGACCTGGCCCAGGCAGGCAGCACAGTGGAGTCCAAGATCTACGACACGCTCCAGTGGCAGATCTGGACCCTCCTGCCTGGGTTCTGCACGAGGCCCACGGACGTGGCCACCGCCTTCAAAGGGCTGGCGCGGACGCTGGGCACGGCCATCAGCGAGCGCCCAGACCTGAGGGTTACTGTGTGCCAGGCCCTGCGCACCCTCATCACCAAGGGCTGTGAGGCGGGTCCCCCAAAAGAATGCCTCTGGGCTGCAACCACAGTGGCCTTTGAGGCAGGGTCATCTCCTGGCCCTTTTGTGCAAACTTTGGTCCTCCTGCCAGAGGCTGACCGTGCTGAAGTGAGCCGCTTTGCGAAGAACTTTCTGCCGATCCTGTTCAACCTGTACGGGCAGCCCGTTGCAGCTGGAGACACCCCAGCCCCTCGCCGGGCCGTGCTGGAAACCATCAAAACTTACCTCACCATTACTGAGCCTCAGTTGGTGAATGGTTTCCTGGAAAAAGCCAGTGAGAAGGTGCTGGACCCTGCTAGCTCTGACTTCACCAGTAGACATGAGGACACTGATAGTCCATGCCCTTCCCCAGCCTCCACTAAGCTTCTCCTTGGTCTCCTGTCGCTGAGCAGATTGTCCGTCCTGGACCTGGTCGTGGCCTTGGCTCCCCACGCTGATGAAGCCGCCATCAGCAAGCTGTACTCCACCATCCGGCCCTACCTAGAGAGCAAGGCCCATGGGGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGCGCCAGCCCCCAGGGCCCTGGCGCCCGCTTCGTGCAGAGCCACCTGGACGACCTGAAGAAGACCCTTCTGGACTCGCTACGGAGCACCTCCTCGCCCGCCAAGAGGGTGCGGACTCCAGGGGCCCCGCTCTGCCCGAGGGGGGACGAGCGACACCAGGAGAGGACCAGCGTGGAGACGCTTAGGGACTTCAGGGGCGGAGGCGGCATTGAGGGTCCTGACTGTTGTCCCCCTGTCCCGCAGCCCCGTTTGAAGTGCCTCATACATATCGTGAGGAAGCTCTCAGCCGAGCACGAGGAGTTCATCAGTGCCCTCGTCCCGGAGGTGATCCTCTGCACCAAGGAGGTGTCGGTGGGAGCTCGGAAGAATGCTTTTGCGCTGCTGGTGGAGATGGGCCACGCCTTCCTTCGGTTTGGGCCAAACCCGGCAGAGGCCCTGCAGCGCTACCTCGTCCTGATCTACCCCGGTCTCGTGGGCGCTGTGACCATGGTCAGCTGCAGTATCCTGGCCCTGACCCACCTCCTTTTCCAGTTTAAAGGTCTGATGGGGACCAGCACGATGGAGCAGCTGCTGGAGAATGTGTGCCTGCTCCTGGCCTCCCGCACCCGCGACGTGGTCAGGTCAGCACTGGGCTTCATCAAGGTGGCAGTGGTCGTCATGGACGTGGCACATCTGGCCAAGCACGTGCAGCTGGTGATGGGAGCCATCGGGAAGCTCTCGGACGACATGCGGCGGCACTTCCGCATGAAGCTTCGGAACCTGTTCACCAAGTTCATCCGCAAGTTCGGGTTCGAGCTGGTGAGGAAGCTCCTGCCAGAGGAGTACCAGAAAGTCCTGGTAAACATCCGGAAAGCAGAGGCCCGGGCCAAGAAACACCGGGCCCTGAACCAGGCCGCCGTGGAAGAGGAGGAGGAGGAGGAGGAGCCCGTCCAGGGCAAAGGCGACAGCATCGAGGAGATTTTGGCTGACTCAGAGGATGAGGAGGACGAGGAGGAGGAGAGGAGCCGGGGCAAGGAGCAGCAGAGGCTGGCCCGCCACAGGAGCCGAGCGTGGCTGAAGGAGGGTGGCGGGGACGAGCCCCTCAACTTCTTGGACCCCAAGGTGGCCCAGCGAGTCCTGGCCACCCAGCCTGGGCCGGGTCGGGGCAAGAAGGACCACGGCTTCAAGGTGAGCGCCGACGGCCGGCTGATCATCCGTGAGGAGGAGGATGACAACGCCAAGCTGGAGGAAGAGGAAGGCGCTAAAGGGGAGGATGAAGAGATGGCTGACCTGATGGAAGACGTGGGTGTCAGGAGTAAAAAGCACCAGAAGCTCAAGCAGAAAGAGGCTGACGATGAGGAGCTGGAGATGCCCCCTCAGTACCAAGCGGGAGGCTCTGGCATCCATCGCCCTGTGGCCAAGAAGGCTACCCCCGGGGCCGAATACAAGGCCAAGAAAGCAAAGGGTGACGTGAAGAAGAAAGGTCGGCTCGAGCCCTATGCCTACATCCCCCTCAGTAAAACCAAGCTCAACCGCAGGAAGAAGGTGAAGCTGCAGGGACAGTTCAAAGGCCTGGTGAGAGCTGCCCAGCGGGGCTCCCAGGTGGGACACAAGCTCCGCAGAAAGGATCAACGGCCCTGA

Related Sequences

bmy_11417T0 Protein

Length: 1398 aa      View alignments
>bmy_11417T0
MGRSGKLPSGVSAKLKRWKKGHSSDSNPAISRHRQAARSRFFSRPSGKSDLTVDAVKLHNELQSGSLRLGKSEAPETAMEEEEVAPALTEKSSGTFLSGLSDCTNVTFSKVQRFWESSSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESAESLAAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSTQASSGSTSALRWVLSCLATLLRKQDLEAWSYPVTLQVYHGLLSFTVHTKPKIRKAAQHGVCSVLKGSEFMFGEKAPAHHPAAMSTAKFCIQEIEKSGGSKEATTTLHMLTLLKDLLPCFPDGLVKSCSETLLRVMTLSHVLVTACAMQAFHSLFHAKPSXGTLPAELNAQIITALYDYVPSENDLQPLLAWLKVMEKAHINLVRLHRDLGLGHLPRFFGTATTCLLSPHSQVVTAATQCLQEILKECVAPHMADIGSVTSSASGPAQYVAKMFRAVEEGLTYRFHASWSSVLQLLCVFFEACGRQAHPVMRKCLQSLCDLRLSPYSPRTAAVDRAVGAAVASMGPEVVLEAVPLEIDGSEETLDFPRSWLLPVVRDHVRETRLGFFTAYFLPLATTLKRKAMDLAQAGSTVESKIYDTLQWQIWTLLPGFCTRPTDVATAFKGLARTLGTAISERPDLRVTVCQALRTLITKGCEAGPPKECLWAATTVAFEAGSSPGPFVQTLVLLPEADRAEVSRFAKNFLPILFNLYGQPVAAGDTPAPRRAVLETIKTYLTITEPQLVNGFLEKASEKVLDPASSDFTSRHEDTDSPCPSPASTKLLLGLLSLSRLSVLDLVVALAPHADEAAISKLYSTIRPYLESKAHGVQKKAYRVLEEVCASPQGPGARFVQSHLDDLKKTLLDSLRSTSSPAKRVRTPGAPLCPRGDERHQERTSVETLRDFRGGGGIEGPDCCPPVPQPRLKCLIHIVRKLSAEHEEFISALVPEVILCTKEVSVGARKNAFALLVEMGHAFLRFGPNPAEALQRYLVLIYPGLVGAVTMVSCSILALTHLLFQFKGLMGTSTMEQLLENVCLLLASRTRDVVRSALGFIKVAVVVMDVAHLAKHVQLVMGAIGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVRKLLPEEYQKVLVNIRKAEARAKKHRALNQAAVEEEEEEEEPVQGKGDSIEEILADSEDEEDEEEERSRGKEQQRLARHRSRAWLKEGGGDEPLNFLDPKVAQRVLATQPGPGRGKKDHGFKVSADGRLIIREEEDDNAKLEEEEGAKGEDEEMADLMEDVGVRSKKHQKLKQKEADDEELEMPPQYQAGGSGIHRPVAKKATPGAEYKAKKAKGDVKKKGRLEPYAYIPLSKTKLNRRKKVKLQGQFKGLVRAAQRGSQVGHKLRRKDQRP*