Part of scaffold_644 (Scaffold)

For more information consult the page for scaffold_644 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SNRNP40 ENSTTRG00000014868 (Bottlenosed dolphin)

Gene Details

small nuclear ribonucleoprotein 40kDa (U5)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014096, Bottlenosed dolphin)

Protein Percentage 96.74%
cDNA percentage 97.1%
Ka/Ks Ratio 0.24841 (Ka = 0.0143, Ks = 0.0575)

BT.59135 ENSBTAG00000016817 (Cow)

Gene Details

U5 small nuclear ribonucleoprotein 40 kDa protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022372, Cow)

Protein Percentage 96.74%
cDNA percentage 93.84%
Ka/Ks Ratio 0.06998 (Ka = 0.0134, Ks = 0.191)

SNRNP40  (Minke Whale)

Gene Details

small nuclear ribonucleoprotein 40kDa (U5)

External Links

Gene match (Identifier: BACU003285, Minke Whale)

Protein Percentage 97.28%
cDNA percentage 98.19%
Ka/Ks Ratio 0.53485 (Ka = 0.012, Ks = 0.0224)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 552 bp    Location:70620..77023   Strand:+
>bmy_11443
ATGATAGAACAGCAGAAGCGAAAGGGCCCAGAGTTGCCGCTGGTACCAGTTAAGCGGCCGCGGCATGAATTGCTATTGGGAGCGGCGGGGTCGGGCCCCGGAGCCGGGCAGCAGCAGGCGGCGCCGGGAGCTTTGCTGCAAGCGGGGCCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTTCTCTCAGGACATGAAGGGGAAGTGTATTGCTGCAAGTTTCACCCCAATGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTGTTGTGGAATGTCTATGGTGACTGCGATAACTATGCTACATTGAAGGGACACAGTGGAGCAGTGATGGAACTGCATTATAACACAGACGGCAGTATGCTCTTCTCAGCATCCACAGATAAAACTGTGGCGGTGTGGGATAGTGAAACAGGCGAGAGGGTTAAAAGACTGAAGGGGCACACTTCCTTTGTGAATTCCTGTTATCCGGCCAGGAGGGGTCCCCAGCTTGTCTGCACTGGCAGTGACGACGGTACAGTTAAGKTATCCTACAGAATAATA

Related Sequences

bmy_11443T0 Protein

Length: 184 aa      View alignments
>bmy_11443T0
MIEQQKRKGPELPLVPVKRPRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKXSYRII