Sequence detailsbmy_11478 (Coding sequence)

Part of scaffold_625 (SequenceType object (1))

For more information consult the page for scaffold_625 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ATN1ENSTTRG00000004784 (Bottlenosed dolphin)

Gene Details

atrophin 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004515, Bottlenosed dolphin)

Protein Percentage 84.61%
cDNA percentage 84.78%
Ka/Ks Ratio 0.28186 (Ka = 0.0153, Ks = 0.0541)

ATN1ENSBTAG00000018828 (Cow)

Gene Details

atrophin-1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000025063, Cow)

Protein Percentage 96.94%
cDNA percentage 93.75%
Ka/Ks Ratio 0.08337 (Ka = 0.0159, Ks = 0.1909)

Additional orthologs identified in other species via the OPTIC pipeline.

ATN1 (Human)   Atn1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3540 bp    Location:351940..344903   Strand:-
Raw sequence 
>bmy_11478
ATGAAGACACGACAGAATAAAGACTCAATGTCAATGAGGAGTGGACGGAAGAAAGAGGCCCCTGGGCCCCGGGAAGAACTGAGATCGAGGGGCCGGGCCTCCCCTGGAGGGGTCAGCACGTCCAGCAGCGATGGCAAAGCCGAGAAGTCTAGGCAGACGGCCAAGAAGGCCCGAGTAGAGGAAGCCTCCACCCCAAAGGTCAGCAAGCAGGGCCGGAGTGAGGAGATCTCGGAGAGTGAAAGTGAGGAGACCAACGCGCCAAAAAAGACCAAAACTGAGCAGGAGCTCCCTCGGCCACAGTCTCCCTCGGATCTGGATAGTTTGGATGGGCGGAGCCTCAATGATGATGGCAGCAGCGACCCTAGGGATATCGACCAGGATAACCGAAGCACGTCCCCCAGCATCTACAGCCCTGGAAGCGTGGAGAATGACTCCGACTCGTCTTCTGGCCTGTCCCAGGGCCCAGCCCGCCCCTACCATCCACCTCCACTCTTTCCTCCCTCCCCTCCCCCTCCAGATAGCACCCCTCGACAGCCAGAGCCTGGCTTTGAATCCCATCCTGCTGGGACACCCACTGGGTATCATGCTCCCATGGAGCCTCCCACATCTCGAATGTTCCAGGCTCCTCCAGGGGCCCCTCCCCCTCATCCACAGCTCTATCCTGGGGGCGCTGGTGGAGGAGTTCTGTCTGGACCCCCAGTGGGCCCCAAGGGGGGAGGGGCTGCCGCTTCAGTGGGGGCCCCTAGTGGGGGTAAGCAGCACCCCCAGCCCCCCACCCCCATTTCAATATCAGGCTCTGGGGCTGGTGGTGCTCCCCCAACAAAGCCGCCCAACACCCCAGCTGGTGGTGGAAACCTACCGTCTGCTCCACCACCAGCCACCTTCCCCCACGTGACACCAAACCTGCCTCCCCCGCCTGCCCTGAGACCCCTTAACAATGCCTCTGCCTCTCCTCCTGGCCTGGGGGCCCAGCCGCTAGCTGGGCATCTGCCCTCTCCCCATGCCATGGGGCAGGGTATGGGTGGACTTCCTCCCGGCCCAGAGAAGGGCCCCACTCTTGCTCCCTCTCCCCACCCTTTGCCCCCTGCGTCCACCTCTTCTGCTCCCGCCCCGCCGATGAGGTATCCTTACTCGTCCTCCAGCAGCAGCTCTGCAGCAGCCTCCTCTTCCAGTTCTTCGGCCTCGGCCTCGGCCTCCCAGTACCCAGCTTCCCAGGCACTGCCCAGTTATCCCCACTCCTTCCCTCCCCCCACCAGCCTCTCTGTCTCCAATCAGCCACCCAAGTATACTCAGCCTTCTCTCCCGTCCCAAGCTGTGTGGAGCCAGGGTCCGCCCCCGCCTCCTCCCTATGGCCGCCTCTTGGCCAACAGCAATGCCCACCCAGGCCCCCTCCCTCCTTCAGCTGGAGGCCAATCCACTGCCCACCCACCAGTCCCGACACATCACCACCACCACCAGCAACAGCAGCAGCAGCAGCATCATGGGGGCTCTGGGCCCCCCCCACCCGGGGCATATCCTCACCCCCTGGAGAGCGGTAGCTCCCACCACGCACACCCCTATGCCATGTCTCCCTCCCTGGGGTCTCTGAGGCCCTACCCACCAGGGCCCGCACACCTGCCTCCACCTCACAGCCAGGTGGCCTACAGCCAAGCAGGTCCCAGCGGCCCCCCAGCCTCTTCCTCTTCCAATGCCTCTTCCTCCTCTCAAGGGTCCTACCCGTGTTCACACCCCTCTCCTTCCCAGGGCCCCCAAGGGGCGCCCTACCCCTTCCCACCGGTGCCCCCGGTCACCACCTCTTCGTCTACGCTTTCCACGGTCATTGCCACAGTGGCTTCCTCGCCAGCAGGCTACAAGACAGCCTCCCCACCTGGGCCCCCACCGTATGGCAAGCGAGCCCCGTCCCCAGGGGCCTACAAGACAGCCACCCCGCCCGGATACAAGCCGGGGTCCCCGCCCTCCTTCCGAACGGGGACCCCACCGGGCTACCGAGGCGCCTCGCCGCCCGCAGGCCCAGGGACCTTCAAGCCGGGCTCGCCCACGGTGGGGCCCGGGCCGCTGCCGCCTCCGGGCCCCTCGGGCCTGTCATCCCTGCCACCACCGCCTGCGGCCCCCGCCTCAGGGCCGCCCCTGAGCGCCACGCAGATCAAACAGGAGCCGGCTGAGGAATATGAGACCCCGGAGAGCCCGGCGCCCCCGGCCCGCAGCCCCTCGCCCCCTCCCAAGGTGGTAGACGTGCCCAGCCACGCCAGCCAGTCGGCCAGGTTCAACAAACACCTGGACCGCGGCTTTAACTCGTGCGCACGCAGCGATCTGTACTTCGTGCCGCTGGAGGGCTCCAAGCTGGCCAAGAAGCGAGCCGACCTGGTGGAGAAGGTGCGGCGCGAGGCCGAGCAGCGCGCGCGCGAAGAAAAGGAGCGCGAGCGCGAGCGGGAACGCGAGAAGGAGCGCGAGCGCGAAAAGGAGCGCGAGCTGGAACGCAGCGTGAAGTTGGCGCAGGAGGGCCGTGCTCCAGTGGAGTGCCCATCTCTCGGCCCAGTGCCCCATCGCCCTCCATTTGAGCCGGGCAGTGCTGTGGCTACAGTGCCCCCCTACCTGGGTCCCGACACTCCAGCCCTGCGCACCCTCAGTGAATACGCCCGGCCCCACGTCATGTCTCCTGGAAATCGCAACCATCCATTCTACGTGCCCCTGGGGGCAGTGGACCCGGGCCTCCTGGGTTACAATGTCCCGGCCCTGTACAGCAGTGACCCAGCAGCCCGGGAGAGGGAGCGGGAAGCCCGTGAACGAGACCTGCGTGACCGCCTCAAGCCTGGCTTCGAGGTGAAGCCTAGTGAGCTGGAACCCCTACACGGGGTCCCTGGGCCAGGCCTGGATCCCTTCCCCCGACACGGGGGCCTGGCTCTGCAGCCTGGCCCACCTGGCTTGCACCCTTTCCCCTTTCATCCGAGCCTGGGGCCCCTGGAGAGAGAACGTCTAGCGCTGGCAGCTGGGCCAGCCCTGCGGCCTGACATGTCCTACGCGGAGCGTCTGGCAGCTGAGAGGCAGCATGCAGAAAGGGTGGCTGCCCTGGGCAACGACCCGCTGGCCCGGCTGCAGATGCTCAACGTGACCCCCCATCACCACCAGCACTCCCACATCCACTCTCACCTGCACCTCCACCAGCAGGATGCCATCCATGCAGCCTCTGCCTCGGTGCACCCTCTCATTGACCCCCTGGCCTCAGGGTCTCACCTTACCCGGATCCCCTACCCAGCTGGGACCCTCCCCAACCCCCTTCTTCCTCACCCTCTGCACGAGAACGAAGTTCTTCGTCACCAGCTCTTTGCTGCTCCTTACCGGGACCTGCCGGCCTCCCTCTCTGCCCCGATGTCAGCAGCTCACCAGCTGCAGGCCATGCACGCGCAGTCCGCCGAGCTGCAGCGCTTGGCGCTCGAGCAGCAGCAGTGGCTGCACGCCCACCACCCGCTGCACGGTGTGCCGCTCCCGGCCCAGGAGGACTACTACAGTCACCTGAAGAAGGAAAGCGACAAGCCGCTGTAG

Related Sequences

bmy_11478T0 SequenceType object (3)

Length: 1180 aa      View alignments
>bmy_11478T0
MKTRQNKDSMSMRSGRKKEAPGPREELRSRGRASPGGVSTSSSDGKAEKSRQTAKKARVEEASTPKVSKQGRSEEISESESEETNAPKKTKTEQELPRPQSPSDLDSLDGRSLNDDGSSDPRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPPPPDSTPRQPEPGFESHPAGTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGAGGGVLSGPPVGPKGGGAAASVGAPSGGKQHPQPPTPISISGSGAGGAPPTKPPNTPAGGGNLPSAPPPATFPHVTPNLPPPPALRPLNNASASPPGLGAQPLAGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHPLPPASTSSAPAPPMRYPYSSSSSSSAAASSSSSSASASASQYPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPLPPSAGGQSTAHPPVPTHHHHHQQQQQQQHHGGSGPPPPGAYPHPLESGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVAYSQAGPSGPPASSSSNASSSSQGSYPCSHPSPSQGPQGAPYPFPPVPPVTTSSSTLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGASPPAGPGTFKPGSPTVGPGPLPPPGPSGLSSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPAPPARSPSPPPKVVDVPSHASQSARFNKHLDRGFNSCARSDLYFVPLEGSKLAKKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSVKLAQEGRAPVECPSLGPVPHRPPFEPGSAVATVPPYLGPDTPALRTLSEYARPHVMSPGNRNHPFYVPLGAVDPGLLGYNVPALYSSDPAAREREREARERDLRDRLKPGFEVKPSELEPLHGVPGPGLDPFPRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPALRPDMSYAERLAAERQHAERVAALGNDPLARLQMLNVTPHHHQHSHIHSHLHLHQQDAIHAASASVHPLIDPLASGSHLTRIPYPAGTLPNPLLPHPLHENEVLRHQLFAAPYRDLPASLSAPMSAAHQLQAMHAQSAELQRLALEQQQWLHAHHPLHGVPLPAQEDYYSHLKKESDKPL*