Sequence detailsbmy_11499 (Coding sequence)

Part of scaffold_625 (SequenceType object (1))

For more information consult the page for scaffold_625 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IFFO1ENSTTRG00000016097 (Bottlenosed dolphin)

Gene Details

intermediate filament family orphan 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000015256, Bottlenosed dolphin)

Protein Percentage 98.22%
cDNA percentage 98.69%
Ka/Ks Ratio 0.14421 (Ka = 0.0071, Ks = 0.0494)

IFFO1ENSBTAG00000030369 (Cow)

Gene Details

intermediate filament family orphan 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000019606, Cow)

Protein Percentage 96.24%
cDNA percentage 95.05%
Ka/Ks Ratio 0.05446 (Ka = 0.0159, Ks = 0.2916)

IFFO1 (Minke Whale)

Gene Details

intermediate filament family orphan 1

External Links

Gene match (Identifier: BACU003083, Minke Whale)

Protein Percentage 98.65%
cDNA percentage 98.83%
Ka/Ks Ratio 0.11128 (Ka = 0.0054, Ks = 0.0488)

Additional orthologs identified in other species via the OPTIC pipeline.

IFFO1 (Human)   Iffo1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1689 bp    Location:664691..676504   Strand:+
Raw sequence 
>bmy_11499
ATGAATCCGTTATTCGGCCCCAACCTCTTCCTCCTCCAGCAGGAGCAGCAAGGCCTGGCCGGGCCGCTGGGGGACCCCGTGGGAAGCGACCACTTGGCCGGCGGCGGGGACGTGCCCCCGGCGCCGCTCGCCCGGGCCGGCCCGGCTCCCTACTCGCCGCCCGGGCCGGGCCCGGCGCCCCCCGCCGCCATGGCGCTCCGCAACGACCTGGGCTCCAACATCAACGTGCTCAAGACCCTGAACCTCCGCTTCCGCTGCTTCCTGGCCAAGGTGCACGAGTTGGAGCGCCGCAACCGGCTGCTGGAGAAGCAGCTGCAGCAGGCGCTGGAGGAGGGTAAGCAGGGCCGGCGGGGCCTGGCTCGCCGAGACCAGGCCGTGCAGACCGGCTTTGTCAGCCCCGTCAGACCCCTGGGGCTGCCCCTGGGCGCCCGGCCGGCTGCCGTCTGCACCCCGTCGGCGCGGGTGCTGGGCTCGCCCGCGCGCTCGCCAGCAGGCCCCCTCGCGCCCTCCGCGGCCTGCCACCCGGCTCCCTCCACCTCCGCCTCCTCCGCCTGCTCCTCGTCGGCCCGCTTCATGCCGGGCACCATCTGGTCCTTCTCTCACGCCCGCCGGCTCGGGCCGGGACTGGAGCCCACTTTGGTGCAAGGGCCTGGCCTGTCGTGGGTGCACCCCGACGGGGTGGGCGTCCAGATCGACACCATCACCCCCGAGATCCGCGCTCTCTACAACGTGCTGGCTAAAGTGAAGCGCGAGCGGGACGAGTACAAGCGGAGGTGGGAAGAGGAGTACGTGGTGAGGCTGCAGCTGCAGGAGCGCGTGAACGAGCTCCAGGAGGAGGCCCAGGAGGCTGACGCCTGCCAGGAGGAGCTGGCCCTGAAGGTGGAGCAGCTGAAGGCCGAGCTGGTGGTCTTCAAGGGGCTCATGAGCAACAACCTGTCCGACCTGGACACGAAGATCCAGGAGAAGGCCATGAAGGTGGACATGGACATCTGCCGCCGCATCGACATCACCGCCAAGCTCTGTGACTTGGCCCAGCAGCGCAACTGCGAGGACGTGATCAAGATGTTCCAGGTCCCGTCCATGGGGGGGCGGAAGCGGGAGCGCAAGGCTGCCGTCGAGGAGGACACCTCCCTGTCAGAGAGTGACGGGCCCTGCCGCCCCGACGGGGATGAGGAGGAGAGCGCGGCCCTCAGCATCAACGAGGAGATGCAGCGTATGCTGAACCAGCTGAGGGAGTATGATTTTGAGGACGACTGTGACAGCCTGACTTGGGAGGAGACTGAGGAGACCCTGCTGCTCTGGGAGGATTTCTCGGGCTATGCCCTGGCTGCTGCAGAGGCCCCGGGAGAGCAGCCGGAAGACAGTTTGGAGAAGGTGATTAAAGATACTGAGTCCCTGTTCAAAACCCGGGAGAAAGAATATCAGGAAACCATTGACCAGATAGAGCTGGAGCTGGCCACGGCCAAGAACGACATGAACCGGCACCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGGGGCCTGGACGTGCAGATGGAGACCTGCCGCCGGCTCATCACCCAGTCCGGGGACCGAAAGTCTCCTGCTTTCACTGCGGCCCCGCTTAGCGACCTGCCGCCCCCGCCGCCACCAAGCGAGGCTGAGGACTCCGATCGCGACGTCTCATCTGACGGCGCCGTGAGATAG

Related Sequences

bmy_11499T0 SequenceType object (3)

Length: 563 aa      View alignments
>bmy_11499T0
MNPLFGPNLFLLQQEQQGLAGPLGDPVGSDHLAGGGDVPPAPLARAGPAPYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFVSPVRPLGLPLGARPAAVCTPSARVLGSPARSPAGPLAPSAACHPAPSTSASSACSSSARFMPGTIWSFSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYVVRLQLQERVNELQEEAQEADACQEELALKVEQLKAELVVFKGLMSNNLSDLDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDVIKMFQVPSMGGRKRERKAAVEEDTSLSESDGPCRPDGDEEESAALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYALAAAEAPGEQPEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAAPLSDLPPPPPPSEAEDSDRDVSSDGAVR*