Part of scaffold_625 (Scaffold)

For more information consult the page for scaffold_625 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LTBR ENSTTRG00000014466 (Bottlenosed dolphin)

Gene Details

lymphotoxin beta receptor (TNFR superfamily, member 3)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013715, Bottlenosed dolphin)

Protein Percentage 80.62%
cDNA percentage 84.61%
Ka/Ks Ratio 0.55014 (Ka = 0.152, Ks = 0.2763)

LTBR ENSBTAG00000015312 (Cow)

Gene Details

tumor necrosis factor receptor superfamily member 3 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020355, Cow)

Protein Percentage 68.88%
cDNA percentage 78.07%
Ka/Ks Ratio 0.37892 (Ka = 0.2081, Ks = 0.5493)

LTBR  (Minke Whale)

Gene Details

lymphotoxin beta receptor (TNFR superfamily, member 3)

External Links

Gene match (Identifier: BACU003085, Minke Whale)

Protein Percentage 83.85%
cDNA percentage 86.78%
Ka/Ks Ratio 0.5694 (Ka = 0.1294, Ks = 0.2272)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1272 bp    Location:805682..799355   Strand:-
>bmy_11506
ATGCGCCTGCCGTGGGCCGCCTCCCCCTGCGGCCTGGCCTGGGGGCCGCTCATATTGGGCCTCTGGGGTCTCCTGGCAGCATCCCAGCCCCAGCTGGTGCCCCCATACCGCACGGAGAACCAAACCTGCCGGGACCAGGAAAAGGAGTACTACGAGCCCAAGCATCACGTCTGCTGTTCCCGCTGCCCCCCAGGCACACACGTCTCGGCTGAATGCGGCCCCGACCAGGACACCACTTGTGCCACGTGCCCCGAAAATTCCTACAACGAGCACTGGAACCATCTCTCCATCTGCCAGCTGTGCCGCCCCTGTGACCAGATGCTGGGCTTCGTGGAGATCACGCCTTGCACTAGCAAACACAAAACCCAGTGCCGCTGCCAGCCAGGACTGTTCTGCGTCTTTTGGGGCTCTGAGTGTGTACACTGCGAGTCACTCTCCCACTGCCCGCCTGGCACTGAGGCCGAGCTCAAAGATGAAGACAGGAAGGCTAACAGCAACTGTGTTCCCTGTAAGGCAGGGCACTTCCAGAACACGTCCTCCCCCAGCGCCCGCTGCCAGCCCCACACCAGGTGTGAGGACCAGGGCCTCGTAGAGGCAGCGCCAGGCACCTCCCGGTCTGACACCAGCTGCAGAAATCCACCAGAGCCCTCCGAGACGCCAGAACTGGAGAGCTCTTCCTTAGCTGCCCACCCCGCATCCTGCTCGGGTCCTCACGCCCCGTCCTGTCTGCTGTCCTGCAGGAACGATGCTGGTGCTGGCCGTCTTGCTGCCGCTTGTCTCCCTTCTGCTCCTCACCACTGTCCTCGCCTGCACCTGGAAGAGCCACCCCTCTCTCTGCAGAAAGCTGGGATCCCTGCTCAAGAGGCATCCAGAGAGCCACTTCTGCCCACCTCTGGAGACTTGACCCCAGCCTCGGCCGGGGTCCCGGCGACCCCAGGTTTGGAGGAAGAGGCGCTACAACAGCAGAGTCCTCTGAGCCAGGCCAGGGAGCTGGAGGCTGAGCTCCCAGAGCAAGGCCAGGTGGCCCACGGCACCAATGGCATTCACGTCACCGGCGGGTCTGTGACTGTCACCGGCAACATCTACATCTACAACGGGCCGGTACTGGGGGGCGCACGGGGCCCCGGAGAGCCCCCCGCTCCCCCAGAGCCTCCGTACCCCATCCCTGAAGAGGGTGCCCCTAGCCCTCCCGGGCTCTCCACACCCTACCAGGAGGATGGCAAAGCTTGGCACCTGGCTGAGACAGAGACACTGGGGTGCCACACCCTCTAA

Related Sequences

bmy_11506T0 Protein

Length: 424 aa      View alignments
>bmy_11506T0
MRLPWAASPCGLAWGPLILGLWGLLAASQPQLVPPYRTENQTCRDQEKEYYEPKHHVCCSRCPPGTHVSAECGPDQDTTCATCPENSYNEHWNHLSICQLCRPCDQMLGFVEITPCTSKHKTQCRCQPGLFCVFWGSECVHCESLSHCPPGTEAELKDEDRKANSNCVPCKAGHFQNTSSPSARCQPHTRCEDQGLVEAAPGTSRSDTSCRNPPEPSETPELESSSLAAHPASCSGPHAPSCLLSCRNDAGAGRLAAACLPSAPHHCPRLHLEEPPLSLQKAGIPAQEASREPLLPTSGDLTPASAGVPATPGLEEEALQQQSPLSQARELEAELPEQGQVAHGTNGIHVTGGSVTVTGNIYIYNGPVLGGARGPGEPPAPPEPPYPIPEEGAPSPPGLSTPYQEDGKAWHLAETETLGCHTL*