Sequence details bmy_11562 (Coding sequence)

Part of scaffold_626 (Scaffold)

For more information consult the page for scaffold_626 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TNNC1 ENSTTRG00000008475 (Bottlenosed dolphin)

Gene Details

troponin C type 1 (slow)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008034, Bottlenosed dolphin)

Protein Percentage 99.36%
cDNA percentage 99.15%
Ka/Ks Ratio 0.12891 (Ka = 0.003, Ks = 0.0235)

TNNC1 ENSBTAG00000045757 (Cow)

Gene Details

Troponin C, slow skeletal and cardiac muscles

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000055780, Cow)

Protein Percentage 100.0%
cDNA percentage 96.6%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.2468)

TNNC1  (Minke Whale)

Gene Details

troponin C type 1 (slow)

External Links

Gene match (Identifier: BACU005563, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 100.0%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0227)

Additional orthologs identified in other species via the OPTIC pipeline.

TNNC1 (Human)   Tnnc1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 474 bp    Location:522577..516968   Strand:-
Raw sequence 
>bmy_11562
ATGGATGACATCTACAAGGCTGCGGTAGAGCAGCTGACAGAAGAGCAGAAAAATGAGTTCAAGGCAGCCTTTGACATCTTCGTGCTGGGCGCTGAGGATGGCTGCATCAGCACCAAGGAGCTGGGCAAAGTGATGAGGATGCTGGGGCAGAACCCCACACCTGAGGAGCTGCAGGAGATGATTGACGAGGTGGATGAGGATGTGGACTTTGATGAGTTCTTGGTCATGATGGTTCGGTGCATGAAGGATGACAGCAAAGGAAAGTCTGAGGAGGAGCTTTCTGACCTCTTCCGCATGTTTGACAAAAACGCTGACGGCTACATCGACCTGGAGGAGCTGAAGATCATGCTTCAGGCTACGGGTGAGACCATCACAGAGGACGACATTGAGGAGCTCATGAAGGATGGTGACAAGAACAACGATGGCCGCATTGACTATGACGAGTTCCTGGAATTCATGAAGGGGGTGGAGTAG

Related Sequences

bmy_11562T0 Protein

Length: 158 aa      View alignments
>bmy_11562T0
MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE*