Sequence details bmy_11578 (Coding sequence)

Part of scaffold_632 (Scaffold)

For more information consult the page for scaffold_632 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SCAF4 ENSTTRG00000010963 (Bottlenosed dolphin)

Gene Details

SR-related CTD-associated factor 4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010404, Bottlenosed dolphin)

Protein Percentage 98.92%
cDNA percentage 98.83%
Ka/Ks Ratio 0.18615 (Ka = 0.0052, Ks = 0.0281)

SCAF4 ENSBTAG00000018855 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025104, Cow)

Protein Percentage 94.3%
cDNA percentage 92.54%
Ka/Ks Ratio 0.14171 (Ka = 0.0309, Ks = 0.218)

SCAF4  (Minke Whale)

Gene Details

SR-related CTD-associated factor 4

External Links

Gene match (Identifier: BACU010383, Minke Whale)

Protein Percentage 97.15%
cDNA percentage 97.55%
Ka/Ks Ratio 0.38716 (Ka = 0.0182, Ks = 0.047)

Additional orthologs identified in other species via the OPTIC pipeline.

SCAF4 (Human)   Scaf4 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3390 bp    Location:91632..126717   Strand:+
Raw sequence 
>bmy_11578
ATGGATATGAAACCTCCCATCTCTCGAGCCAAGATGATTCTCATCACGAAAGCTGCTATTAAAGCTATTAAGCTTTATAAGCATGTAGTTCAAATAGTAGAAAAGTTCATCAAAAAGTGTAAACCAGAATACAAGGTTCCGGGATTATATGTAATCGACTCAATTGTGAGACAGTCTCGTCATCAGTTTGGAACTGATAAAGATGTTTTTGGGCCCAGATTCTCTAAAAACATAACTGCCACATTCCAATATTTGTATCTTTGTCCATCTGAAGATAAGAGTAAAATAGTTCGTGTGCTGAACCTTTGGCAAAAAAATGGAGTATTCAAAATTGAAATTATTCAACCGCTTTTGGACATGGCAGCAGGAACCAGTAATGCCGCCCCAGTAACAGAAAATGTTACTAATAATGAAGGTTCACCTCCACCTCCAGTTAAAGTTTCTTCTGAACCCTCACAAGCCACTACAAACTCCATACCAACTGTACCACAGTTGCCCAGCTCTGATGCTTTTGCTGCTGTGGCCCAACTGTTTCAGACAACTCAAGGTCAACAGCTTCAGCAGATCCTTCAGACTTTTCAACAGCCTCCAAAACCACAGTCTCCCGCCATTGACAATGCTGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGTTAAAGACAGCTCCTACACAACCACCTGAACAAAAAGCTGCTTTCCCCCAACCTGAACAAAAAACTGCATTTGACAAGAAGCTACTTGATAGATTTGATTACGATGATGAGCCGGAAGCTGTGGAAGAAGCAAAGAAAGAAGATGCTGCTGCTGCTGCCGCCGCCGCGGCCACCGCCACCGCCGCCGCCACCACAGCACCTGCTGCTGCTGTTGCGCCCTCTGCACCTGCTGCTGCTGTACCTTCTGTCGCTGCGACCGCTGCTTCTCCTCCACAGGCACCCTTTGGATTTCCTGGAGATGGCATGCAGCAACCAGCATATACCCAGCACCAAAACATGGATCAGTTTCAACCTCGAATGATGCCAATACAGCAGGATCCAGTGCACCATCAGGTTCCACTTCCTCCTAATGGACAGATGCCAGGATTTGGCCTTCTTCCTACACCTCCATTTCCTCCCATGGCTCAGTCCGTGATTCCTCCAACTCCACCCGTGCAGCAGCCTTTCCAGACTTCCTTTCAGGCACAAAGTGAACCACTTACACAAAAGGCACATCAGGAAATGGAAGTAGAACAACCTTGTATTCAAGAGGTTAAGCGGCACATGTCCGATAACAGAAAGTCAAGATCTAGATCAGCATCCAGGTCACCAAAAAGGAGACGATCTCGATCTGGTTCTAGAACTCGAAGGTCTCGTCATCGACGTTCTCGATCTCGGTCCAGAGATAGACGCCGACATTCTCCTAGATCTCGATCCCAAGAAAGAAGGGATCGGGAAAAAGAAAGAGAGCGCCGACAAAAAGGCCTTCCTCAAATCAAACCAGAAACTGCTAGTGTTTGTAGTACTACACTCTGGGTGGGACAGCTGGACAAAAGGACTACTCAGCAGGATGTTGCCAGTCTCTTAGAAGAGTTTGGTCCAATTGAATCAATTAATATGATTCCTCCCAGAGGTTGTGCCTATATTGTTATGGTTCATAGGCAAGATGCTTACCGTGCCCTGCAGAAACTGAGCCGAGGAAACTATAAAGTGAACCAGAAATCCATAAAGATTGCCTGGGCCTTAAACAAAGGAATAAAGGCAGATTATAAGCAGTATTGGGATGTAGAACTTGGTGTTACTTATATTCCGTGGGACAAAGTCAAGCCTGAAGAACTGGAGAGTTTTTGTGAAGGAGGAATGTTGGACAGTGATACACTTAATCCAGATTGGAAGGGAATTCCCAAAAAGCATGAAAATGAAGTTGCTCAAAATGGAGGGGCAGAAACCTCACACACAGAACCAGTATCACCCATACCTAAGCCTTTACCTGTGCCTGTCCCTCCTATTCCTGTTCCTGCACCTATAACAGTACCACCTCCACAGGTCCCACCACATCAGCCGGGACCTCCTGTAGTTGGTGCTCTCCAGCCACCCACTTTCACGCCTCCTTTGGGAATTCCCCCTCCAGGCTTTGGTCCTGGTGTTCCTCCTCCTCCACCTCCTCCACCATTTTTGCGCCCAGGATTCAACCCAATGCATTTACCACCAGGTTTTCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCTCCTCACACTCCACCAATAAACATCCCAAACTCTACTATCGCTGGTATAAATGAAGACACTACAAAAGACTTATCTATTGGAAATCCCATTCCAACAGTGGTGTCTGGGGCTAGAGGAAACGCCGAGTCTGGTGACAGTGTGAAAATGTATGGTTCTGCTGTGCCACCTGCTGCACCCACGAATCTGCCCACCCCTCCTGTAACCCAGCCTGTTTCACTTCTTGGTACTCAAGGAGTTGCACCTGGCCCTGTAATTGGGCTCCAAGCCCCATCCACTGGTCTTCTTGGTGCCCGACCTGGCCTGATCCCACTCCAGCGCCCGCCAGGAATGCCTCCACCTCACCTGCCACGCTTTCCTCTGATGCCGCCTCGTCCCATGCCTCCACATATGATGCACAGAGGTCCGCCACCAGGCCCCGGGGGCTTTGGGATGCCTCCGCCTCATGGAATGAAAGGTCCCTTTCCTCCCCATGGCCCCTTTGTCCGGCCCGGTGGAGTGCCAGGGCTCGGGGGCCCAGGGCCAGGCCCAGGGGGTCCCGAGGACAGAGACGGAAGGCAGCCACCGCCGCAGCAGCCGCCGCCGGCACCGCAGCCGCAGCAACAGCCGCCGACGCAGCCATCGCAGCCGCAGCCGCCGACGCAGCCACAGCCGTTTAGAAACGATAACAGGCAGCAGTTCACTTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTTGGAAATAGGGTGGAAAATGACCGGGAACGGTATGGGAACCGTAATGATGATAGAGAGAATAGTAATCGTGAAAGGAGAGAGTGGGGAAGAAGGAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGAGAGGAATAGACGCTCTAGTGGGCACCGGGACAGAGAGAGAGATTCTAGAGATAGAGAGTCTCGTAGAGAGAAGGAGGAAAACCGAGGCAAGGAGAAGCCTGAGGTGACAGACAGGGCAGGCGGTAACAAAACCGTTGAACCTCCCATTAGTCAAGTGGGAAATGTAGACACTGTTTCAGAACTTGATAAGGGGGAGTCTGAGTCTGCAGTTGTAAAACCTTCTGAAGAGTTACCTGCTGAGGCTACCTCATCCGTTGAACCTGAAAAGGATTCTGGCTCAGCAGCCGAGGCTCCTCGTTAG

Related Sequences

bmy_11578T0 Protein

Length: 1130 aa      View alignments
>bmy_11578T0
MDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVTENVTNNEGSPPPPVKVSSEPSQATTNSIPTVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQPPEQKAAFPQPEQKTAFDKKLLDRFDYDDEPEAVEEAKKEDAAAAAAAAATATAAATTAPAAAVAPSAPAAAVPSVAATAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMPIQQDPVHHQVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQTSFQAQSEPLTQKAHQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRTRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPINIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLPRFPLMPPRPMPPHMMHRGPPPGPGGFGMPPPHGMKGPFPPHGPFVRPGGVPGLGGPGPGPGGPEDRDGRQPPPQQPPPAPQPQQQPPTQPSQPQPPTQPQPFRNDNRQQFTSGRDQERFGRRSFGNRVENDRERYGNRNDDRENSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEENRGKEKPEVTDRAGGNKTVEPPISQVGNVDTVSELDKGESESAVVKPSEELPAEATSSVEPEKDSGSAAEAPR*