Part of scaffold_665 (Scaffold)

For more information consult the page for scaffold_665 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP13 ENSTTRG00000008911 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 13 (isopeptidase T-3)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008451, Bottlenosed dolphin)

Protein Percentage 81.94%
cDNA percentage 83.03%
Ka/Ks Ratio 0.43272 (Ka = 0.0893, Ks = 0.2064)

USP13 ENSBTAG00000005946 (Cow)

Gene Details

Ubiquitin carboxyl-terminal hydrolase 13

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053221, Cow)

Protein Percentage 87.43%
cDNA percentage 86.87%
Ka/Ks Ratio 0.24394 (Ka = 0.0909, Ks = 0.3727)

USP13  (Minke Whale)

Gene Details

ubiquitin specific peptidase 13 (isopeptidase T-3)

External Links

Gene match (Identifier: BACU016604, Minke Whale)

Protein Percentage 87.38%
cDNA percentage 90.29%
Ka/Ks Ratio 0.59297 (Ka = 0.0924, Ks = 0.1558)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2295 bp    Location:657864..520171   Strand:-
>bmy_11688
ATGCAGCGCCGGGGCGCCCTGTTCGGCATGCCGGGCGGCAGCGGCAACCGGAAGATGGCTGCAGGAGACATCGGAGAGCTGCTGGTGCCCCATATGCCCACGATCCGCGTGCCCCGGTCCGGGGACAGGGTCTACAAGAACGAGTGCGCCTTCTCCTACGACTCCCCCAATTCTGAAGGTGGACTCTATGTATGCATGAATACATTTTTGGCCTTTGGAAGGGAGCATGTGGAAAGACATTTTCGAAAAACTGGACAGAGTGTCTACATGTACCTGAAGAGACACGTGCGTGAGAAGGTAAGAGGGGCATCTGGTGGAGCTTTACCCAAAAGGAGGAATTCCAAGATTTTTTTAGATCTAGATACTGATGACGATTTAAATAGCGACGATTATGAATATGAAGATGAAGCCAAACTTGTTATATTCCCAGACCACTATGAAATAGCACTACCAAATATTGAGGAGTTACCAGCCCTGGTAACAATTGCTTGTGATGCAGTTCTCAGCTCAAAATCTCCGTACAGAAAGCAGGACCCAGATACGTGGGAAAATGAATTGCCAGTGTCCAAATATGCAAATAACCTCACCCAGTTAGACAACGGAGTCAGGATTCCTCCAAGTGGTTGGAAGTGTGCCAGGTGTGACCTGCGAGAAAACCTCTGGTTGAATCTGACCGACGGCTCTGTGCTGTGTGGGAAGTGGTTCTTTGACAGCTCCGGGGGCAACGGGCATGCGCTGGAGCATTACAGAGACCTGGGCTACCCTCTAGCTGTGAAACTGGGAGCCATCACTCCTGACGGGGCAGAAGAGGAACCTGTTTTGGATCCTCATTTGGCCAAGCACTTAGCGCATTTTGGAATTGATATGCTTCATATGCATGGGACAGAGAACGGGCTCCAGGACAATGACAGCCAGCCGCGGATCAGCGAGTGGGAGGTGATCCAGGAGACGGGGACGAAGCTGAAGCCCATGTACGGCCCCGGATACACGGGTCTCAAGAACCTGGGCAACAGTTGCTATCTAAGCTCTGTGATGCAGGCCATCTTCAGCATCCCGGAATTCCAGAGAGCGACTAAGTTAGGACATGGCCTTCTCTCAGGCCAGTATTCAAAACCTCCCATGAAATCCGAGCTCATTGAACAGGTGATGAAGGAGGAGCAAAAGCCTCAACAGAATGGGATCTCACCACGCATGTTTAAGGCCTTTGTGAGCAAGAGCCACCCGGAATTCTCCTCCAACAGACAGCAGGATGCCCAGGAATTTTTCTTGCACCTGGTGAATCTAGTAGAGAGGAACCGCATTGGCTCAGAAAACCCCAGTGATGTTTTTCGGTTTTTGGTGGAAGAACGTATTCAGTGCTGTCAGACCCGAAAAGTCCGCTACACGGAGAGGGTGGATTACCTGATGCAGTTACCTGTGGCCATGGAGGCGGCAACCAACAAGGATGAACTGATCGCCTATGAACTAACGAGAAGGGAAGCAGAAGCAAACAGAAAACCCCTTCCCGAGCTGGTTCGTGCCAAGATACCATTTAGTGCCTGCCTTCAGGCCTTTTCTGAACCAGAAAACGTTGATGATTTCTGGAGCAGCGCCCTACAAGCAAAGTCTGCGGGTGTGAAAACATCTCGCTTTGCCTCATTCCCTGAATACTTGGTAGTGCAGATAAAGAAGTTCACTTTTGGTCTTGACTGGGTTCCCAAAAAATTTGATGTTTCTATTGATATGCCAGACCTACTTGATATTAACCATCTCCGAGCCAGGGGGTTACAGCCAGGAGAGGAGGAACTTCCGGACATCAGCCCCCCTGTAGTTATTCCTGACTCAAAAGATCGCCTGATGAACCAGTTGATAGACCCATCAGACATCGATGAGTCATCGGTGATGCAGCTGGCCGAGATGGGTTTCCCTCTGGAAGCGTGTCGGAAGGCTGTGTATTTTACTGGAAATATGGGCGCTGAAGTGGCCTTCAACTGGATCATTGTTCACATGGAAGAGCCAGGGTCAGAGCTTCTTACTCAGAGTGGGAGAGTTTACCAGTGTGTGTATGTGCCGTTTGAACTCATGGTCCAGCTTTTCAAACGTCGTCAGTGGCAAACTTCAGTCACAGTGGAGAAATTTAACAGGAAAATGGGTAACTATAATCACGAATGTAACCAGCTATTACTAACCAAAGAATATGAAGACAAAGTTGGGATCAGATTGCTTTGGGGAAGATTCTGGAAGAAGGAAGGAGACACAATAAAGAAGAATGGGACAACTTCCCAGGATAAATTACTAGAATTGGACCATCAGTGA

Related Sequences

bmy_11688T0 Protein

Length: 765 aa      View alignments
>bmy_11688T0
MQRRGALFGMPGGSGNRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQSVYMYLKRHVREKVRGASGGALPKRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDLGYPLAVKLGAITPDGAEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDNDSQPRISEWEVIQETGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRATKLGHGLLSGQYSKPPMKSELIEQVMKEEQKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRKPLPELVRAKIPFSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEELPDISPPVVIPDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPGSELLTQSGRVYQCVYVPFELMVQLFKRRQWQTSVTVEKFNRKMGNYNHECNQLLLTKEYEDKVGIRLLWGRFWKKEGDTIKKNGTTSQDKLLELDHQ*