Sequence details bmy_11821 (Coding sequence)

Part of scaffold_654 (Scaffold)

For more information consult the page for scaffold_654 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SYNC ENSBTAG00000026684 (Cow)

Gene Details

syncoilin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000037876, Cow)

Protein Percentage 81.19%
cDNA percentage 85.55%
Ka/Ks Ratio 0.34031 (Ka = 0.1226, Ks = 0.3604)

SYNC  (Minke Whale)

Gene Details

syncoilin, intermediate filament protein

External Links

Gene match (Identifier: BACU009628, Minke Whale)

Protein Percentage 94.43%
cDNA percentage 95.31%
Ka/Ks Ratio 0.50997 (Ka = 0.0383, Ks = 0.0751)

Additional orthologs identified in other species via the OPTIC pipeline.

SYNC (Human)   Sync (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1533 bp    Location:607489..621502   Strand:+
Raw sequence 
>bmy_11821
ATGAGGCTGAAGAGGAACACAAGAGCAGAGGCCACTTCTCTTCAAGAGGAGAACTCTGAATCCCCGTATGAGGTGGGGACCTGGAACCCAGAAGTTACTCTGTCTTTGGAAGGGACCTTGAACTTAGAGGATATCCTCTACCTGGGGGACACAGGTGACTTTGATGTGGCTATGTATGTGGAAGAGACCAAGAAGCCTGAGGAGATGCTGCATATTGAGGAGACCAGGACGCCTGATGAGGCCCTGTATGTGGAGGAGCCAGGAAAGCCAGAGGAGATGCTATATGTGGAAGAGCCCGTGAAGCCGGGAAAGACTACAGGCCCAGAGCAGATGGYTTATGGGGGAGAGACAGTCCCGAGCGAGGAGAAACCTAACCCCGAGGAGAGCCTCAGAGCTGGGCCGGGTCCCAGCACAGAGGGGAGCCTGAGCACAGAGGACCTGGAATTGCTGGAGGGGCGTTTCCAGCAGTGTGTCCAAGCCGTGGCCCAGCTGGAAGAGGAGAGGGATCAGCTCATCCACGAGCTTGTGTTGCTCCGGGAACCAGCCCTGCAGGAGGTGCAACGGGTCCACCAGGACATCCTGGCTGCCTACAAACTGCACGCCCAGGCAGAGCTGGAGAGGGATGGGCTGAGGGAGGAGATCCGGCTGGTCAAGCAGAAGCTGTTCAAGGTGACGAAGGAATGTGTGTCCTACCAATATCAGCTGGAGTGCCGCCGGCAGGACGTGGCCCAGTTCRCCGAGTTCCGGGAAGTGCTGACCGCCCGGGCGGCCCAGCTCTCGGAGGAATTAGCCCAGCTTCTGGATGCCTATCAGAAGCAGAAGGAGCAGTTACGGCAACAACTAGAAGCACCTCCAAGCCAGAGGGACGGGCACTTCCTCCAGGAGAGCCGGCAGCTCTCTGCCCAGTTCGAGAGCCTCATGGCAGAGAGCCGCCAGGGCCTGGAGCAGGAGTATGAGCCTCAGCTGCTGCGGCTCCTAGAGAGGAAAGAAGCTGCGGCCGAAGCTYTGCAGAAAACCCAGGCCGAGATCCAGGAGATGAAGGAGGCTCTGCGACCACTGCAGGCAGAGGCCCTTCAGCTCCACCTGCAAAACAGGAATCTGGAGGACCAGACCACCCTTGTGAGGCAAAAACGAGATGAGGAGGTGCAGCAACAAGACTCCTTTCAGAACAGTACCACTGTCAAAAACAGTATCACTGTCAAAACACAAATTCTGTTTCTCAACCTCAACACTGCTATGGAGATTAAACAATGTGTAAGGAAATACACTATTATGGACAATGTCAGGTTTTTATTGTTCGGCGCATTAGAAATGTTCTTGGCCCTCATGCAGGAACAGCTGGAGGAAATGGAAGAACGACAGAGGCAGCTAAGAAGCGGGGTGCAACTCCAGCAACAGAGGAACAAAGAGATGGAGCAGCTAAGGATCAGCCTTGCTGAAGAGCTCTCAACGTACAAGGGCTGTTTAGAAACATATGGCCGAATCTGTAACCAAGAAACGACGACAAAAAACTCCTTAGCAAAGGATCACTAA

Related Sequences

bmy_11821T0 Protein

Length: 511 aa      View alignments
>bmy_11821T0
MRLKRNTRAEATSLQEENSESPYEVGTWNPEVTLSLEGTLNLEDILYLGDTGDFDVAMYVEETKKPEEMLHIEETRTPDEALYVEEPGKPEEMLYVEEPVKPGKTTGPEQMXYGGETVPSEEKPNPEESLRAGPGPSTEGSLSTEDLELLEGRFQQCVQAVAQLEEERDQLIHELVLLREPALQEVQRVHQDILAAYKLHAQAELERDGLREEIRLVKQKLFKVTKECVSYQYQLECRRQDVAQFXEFREVLTARAAQLSEELAQLLDAYQKQKEQLRQQLEAPPSQRDGHFLQESRQLSAQFESLMAESRQGLEQEYEPQLLRLLERKEAAAEALQKTQAEIQEMKEALRPLQAEALQLHLQNRNLEDQTTLVRQKRDEEVQQQDSFQNSTTVKNSITVKTQILFLNLNTAMEIKQCVRKYTIMDNVRFLLFGALEMFLALMQEQLEEMEERQRQLRSGVQLQQQRNKEMEQLRISLAEELSTYKGCLETYGRICNQETTTKNSLAKDH*