Sequence details bmy_11837 (Coding sequence)

Part of scaffold_664 (Scaffold)

For more information consult the page for scaffold_664 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

OPALIN ENSTTRG00000015941 (Bottlenosed dolphin)

Gene Details

oligodendrocytic myelin paranodal and inner loop protein

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015104, Bottlenosed dolphin)

Protein Percentage 48.06%
cDNA percentage 59.69%
Ka/Ks Ratio 0.94713 (Ka = 0.5941, Ks = 0.6272)

OPALIN ENSBTAG00000011740 (Cow)

Gene Details

opalin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015591, Cow)

Protein Percentage 53.66%
cDNA percentage 65.04%
Ka/Ks Ratio 0.75184 (Ka = 0.4522, Ks = 0.6014)

OPALIN  (Minke Whale)

Gene Details

oligodendrocytic myelin paranodal and inner loop protein

External Links

Gene match (Identifier: BACU020381, Minke Whale)

Protein Percentage 44.19%
cDNA percentage 55.81%
Ka/Ks Ratio 0.77337 (Ka = 0.6583, Ks = 0.8511)

Additional orthologs identified in other species via the OPTIC pipeline.

OPALIN (Human)   Opalin (Mouse)  

Genome Location

Sequence Coding sequence

Length: 423 bp    Location:353247..367830   Strand:+
Raw sequence 
>bmy_11837
ATGAGTTTTTCACTGAACTTCACACTGCCGGCCAACACGGACTGTGGACCCTCTCTTGGGTTAGCAGCTGGCATCCCGTCCCTGGTAGCCACAGCCCTGCTGGTGGCCTTACTATTTACTCTGATTCACCAAAGAAGAAGCAGCAGTGAGTCCACTGAGGTGATTAGCAGCTTCTTTGGGTCTGGAAGTGTTGGCAAGAATCGGATGGTATCTGGGGTGGCAAAAAGTAGCAGCGGAGAGGGACGTTTTGTTGCTACGGCAAACACGTCAGTACAGTGGGAAAGTGAGAGGCCTTGTGAAATTTCAGAAATCTATGACAGTCCCAGGATAGCTGAGGAAGTGAGGAGCCCATTCGTGACACTCACCGTCCTGCTGTCGAAGTGGAGAGAAGGAGGGGATTGTGGTGGCTTATTCCCAGACTGA

Related Sequences

bmy_11837T0 Protein

Length: 141 aa      View alignments
>bmy_11837T0
MSFSLNFTLPANTDCGPSLGLAAGIPSLVATALLVALLFTLIHQRRSSSESTEVISSFFGSGSVGKNRMVSGVAKSSSGEGRFVATANTSVQWESERPCEISEIYDSPRIAEEVRSPFVTLTVLLSKWREGGDCGGLFPD*