Sequence detailsbmy_11837 (Coding sequence)

Part of scaffold_664 (SequenceType object (1))

For more information consult the page for scaffold_664 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

OPALINENSTTRG00000015941 (Bottlenosed dolphin)

Gene Details

oligodendrocytic myelin paranodal and inner loop protein

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000015104, Bottlenosed dolphin)

Protein Percentage 48.06%
cDNA percentage 59.69%
Ka/Ks Ratio 0.94713 (Ka = 0.5941, Ks = 0.6272)

OPALINENSBTAG00000011740 (Cow)

Gene Details

opalin

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000015591, Cow)

Protein Percentage 53.66%
cDNA percentage 65.04%
Ka/Ks Ratio 0.75184 (Ka = 0.4522, Ks = 0.6014)

OPALIN (Minke Whale)

Gene Details

oligodendrocytic myelin paranodal and inner loop protein

External Links

Gene match (Identifier: BACU020381, Minke Whale)

Protein Percentage 44.19%
cDNA percentage 55.81%
Ka/Ks Ratio 0.77337 (Ka = 0.6583, Ks = 0.8511)

Additional orthologs identified in other species via the OPTIC pipeline.

OPALIN (Human)   Opalin (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 423 bp    Location:353247..367830   Strand:+
Raw sequence 
>bmy_11837
ATGAGTTTTTCACTGAACTTCACACTGCCGGCCAACACGGACTGTGGACCCTCTCTTGGGTTAGCAGCTGGCATCCCGTCCCTGGTAGCCACAGCCCTGCTGGTGGCCTTACTATTTACTCTGATTCACCAAAGAAGAAGCAGCAGTGAGTCCACTGAGGTGATTAGCAGCTTCTTTGGGTCTGGAAGTGTTGGCAAGAATCGGATGGTATCTGGGGTGGCAAAAAGTAGCAGCGGAGAGGGACGTTTTGTTGCTACGGCAAACACGTCAGTACAGTGGGAAAGTGAGAGGCCTTGTGAAATTTCAGAAATCTATGACAGTCCCAGGATAGCTGAGGAAGTGAGGAGCCCATTCGTGACACTCACCGTCCTGCTGTCGAAGTGGAGAGAAGGAGGGGATTGTGGTGGCTTATTCCCAGACTGA

Related Sequences

bmy_11837T0 SequenceType object (3)

Length: 141 aa      View alignments
>bmy_11837T0
MSFSLNFTLPANTDCGPSLGLAAGIPSLVATALLVALLFTLIHQRRSSSESTEVISSFFGSGSVGKNRMVSGVAKSSSGEGRFVATANTSVQWESERPCEISEIYDSPRIAEEVRSPFVTLTVLLSKWREGGDCGGLFPD*