Sequence detailsbmy_11871 (Coding sequence)

Part of scaffold_661 (SequenceType object (1))

For more information consult the page for scaffold_661 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SOX13ENSTTRG00000008767 (Bottlenosed dolphin)

Gene Details

SRY (sex determining region Y)-box 13

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000008315, Bottlenosed dolphin)

Protein Percentage 89.54%
cDNA percentage 89.38%
Ka/Ks Ratio 0.17878 (Ka = 0.0139, Ks = 0.0779)

SOX13ENSBTAG00000008132 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000010692, Cow)

Protein Percentage 92.51%
cDNA percentage 92.73%
Ka/Ks Ratio 0.10952 (Ka = 0.0327, Ks = 0.2982)

SOX13 (Minke Whale)

Gene Details

SRY (sex determining region Y)-box 13

External Links

Gene match (Identifier: BACU001095, Minke Whale)

Protein Percentage 99.84%
cDNA percentage 99.35%
Ka/Ks Ratio 0.02198 (Ka = 0.0007, Ks = 0.0311)

Additional orthologs identified in other species via the OPTIC pipeline.

SOX13 (Human)   Sox13 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1845 bp    Location:232578..222142   Strand:-
Raw sequence 
>bmy_11871
ATGTCCATGAGGAGCCCCGGCTCTGCCCAGCTGGCCCTGGATGACGTTGGCACCATGGTGAACTGTACTGTCAAGTCAGAGGGGAAGAAGGAGCCCTGCCACGAGGCCCCGCAGGGCTTGGCCACCGCAGCTGAACCCCAGCCCGGAGATCCAGCCCGGGCCCCCCAGGATGGTGCTGACCCTCAAGCTCCAGCCCAGGACAGCAGCTCCCTGGAAAGCAATGGGTCCCCAGAACCCAAGAGACCAGGAGTCTCCGAGGCTGCTTCTGGAAGCCAGGAGAAGCTGGACTTCAACCGAAATTTAAAAGAAGTCGTGCCGGCCATCGAGAAGCTGCTGTCCAGTGACTGGAAGGAGAGGTTTCTGGGAAGGAGCTGTGTGGAAACCAAAGATGTCAAAGGGACCCAGGAGAGCCTGGCAGAGAAGGAGCTGCAGCTGCTGGTCATGATCCATCAGCTGTCCACCCTGCGGGACCAGCTCCTGACGGCCCACTCGGAGCAGAAGAACATGGCCGCTATGCTCTTTGAGAAGCAGCAGCAGCAGATGGAGCTGGCCCGGCAGCAGCAGGAGCAGATCGCTAAGCAGCAGCAACAGCTGATTCAGCAGCAGCATAAGATCAACCTCCTTCAGCAGCAGATCCAGGTCAACATGCCTTACGTCATGATTCCAGCCTTCCCCCCAAGCCACCAACCTCTACCTGTCACCCCCGACTCCCAGCTGGCTTTGCCCATTCAGCCCATTCCCTGCAAGCCAGTGGAGTATCCGCTGCAGCTGCTGCACAGCCCCGCCGCCCCAGTGGTGAAGAGGCCTGGGGCCTTGTCTGCCCACCACCCCCTACAGGAGCCCTCCCAACCCCTGAACCTCACGGCCAAGCCCAAGGCCCCCGAGCTGCCTAATGCCTCCAGCTCCCCGAGCCTGAAGATGAGCAACTGTGGACCCCGTCCTCCCAGCCATGGGGCCCCCACACGGGACCTGCAGGCCAGCCCTCCCAGCCTGCCTTTGGGCTTCCTTGGTGAAGGGGATGCTGTCACCAAAGCCATCCAGGATGCCAGACAGCTGCTGCACGGTCACAGTGGAGCCTTAGAAAGTTCCCCCAACACCTCCTTCCGTAAGGACCTCATTAGCCTGGACACATCCCCAGCCAAGGAGCGGCTGGAGGAGAGCTGTGTGCACCCACTGGAAGAAGCCATGCTGGGCTGTGATGTGGACGGCTCCCGCCACTTCCCTGAGTCCCGGAACAGCAGCCACATCAAGAGGCCCATGAATGCCTTCATGGTGTGGGCCAAGGATGAGAGGAGGAAGATCCTCCAGGCCTTCCCAGACATGCACAATTCCAGCATCAGCAAGATCCTTGGCTCCCGCTGGAAGTCCATGACCAACCAGGAGAAGCAGCCTTACTACGAGGAGCAGGCGAGGCTGAGCCGGCAGCACCTGGAGAAGTACCCTGACTACAAGTACAAGCCACGGCCCAAGCGCACCTGCATCGTGGAGGGCAAGCGGCTGCGGGTGGGCGAGTACAAGGCTCTGATGAGGACCCGGCGCCAGGATGCCCGCCAGAGCTACACGACCCCCCCGCAGGCCAGCCAGGTGCAGATGAGCCCCTCAGATGTCCTGTACCCTCGGGTGGCAGGCGTGCCCCTGGCACAGCCCCTGGTGGAGCACTATGTGCCCCGTGGCCTGGACCCAAACATGCCTGTCATCGTCAATACCTGCAGCCTCAGGGAGGAGGGCGAGGGCACAGAGGACAGGCACTCGGTGGCTGATGGCGAGATGTACCGGTACAGCGAGGATGAGGACTCGGAGGCCGAGGAGAAGAGCGACGGGGAGCTGGTGGTACTCACAGACTGA

Related Sequences

bmy_11871T0 SequenceType object (3)

Length: 615 aa      View alignments
>bmy_11871T0
MSMRSPGSAQLALDDVGTMVNCTVKSEGKKEPCHEAPQGLATAAEPQPGDPARAPQDGADPQAPAQDSSSLESNGSPEPKRPGVSEAASGSQEKLDFNRNLKEVVPAIEKLLSSDWKERFLGRSCVETKDVKGTQESLAEKELQLLVMIHQLSTLRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQVNMPYVMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPAAPVVKRPGALSAHHPLQEPSQPLNLTAKPKAPELPNASSSPSLKMSNCGPRPPSHGAPTRDLQASPPSLPLGFLGEGDAVTKAIQDARQLLHGHSGALESSPNTSFRKDLISLDTSPAKERLEESCVHPLEEAMLGCDVDGSRHFPESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYTTPPQASQVQMSPSDVLYPRVAGVPLAQPLVEHYVPRGLDPNMPVIVNTCSLREEGEGTEDRHSVADGEMYRYSEDEDSEAEEKSDGELVVLTD*