Sequence detailsbmy_11977 (Coding sequence)

Part of scaffold_667 (SequenceType object (1))

For more information consult the page for scaffold_667 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

STRA6ENSTTRG00000004018 (Bottlenosed dolphin)

Gene Details

stimulated by retinoic acid 6

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003787, Bottlenosed dolphin)

Protein Percentage 95.78%
cDNA percentage 97.09%
Ka/Ks Ratio 0.31605 (Ka = 0.0197, Ks = 0.0622)

STRA6ENSBTAG00000007348 (Cow)

Gene Details

stimulated by retinoic acid gene 6 protein homolog

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000038534, Cow)

Protein Percentage 88.02%
cDNA percentage 91.37%
Ka/Ks Ratio 0.27998 (Ka = 0.0613, Ks = 0.219)

STRA6 (Minke Whale)

Gene Details

stimulated by retinoic acid 6

External Links

Gene match (Identifier: BACU017920, Minke Whale)

Protein Percentage 97.12%
cDNA percentage 98.13%
Ka/Ks Ratio 0.32752 (Ka = 0.0125, Ks = 0.0382)

Additional orthologs identified in other species via the OPTIC pipeline.

STRA6 (Human)   Stra6 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2007 bp    Location:432100..455833   Strand:+
Raw sequence 
>bmy_11977
ATGTCGACCCAGGCAGCAGGGAACCAGACCTCCTYCGGGGCCACAGACGACGATGACTCCTACGGCAGCTGGTACATCGACGAGCCCCAGGGTGGCCAGGAGCTCGAGCCGGAAGGGCTGGTGCCCTCCTGCCACCCCAGCGTGCCACCCGGCCTCTACCACGCCTGCCTGGTCGTGCTGTCGGTCCTCGTGTTGCTGCTGCTGGCCATGCTGGTGAAGCGCCGCCAGCTCTGGCCCCACTGTGGGCACGGCAGGCCTGGGCTCCCCAGCCCTGTGGACTTCTTGGCTGGGGACAGGCCCCGGACCGTGCCTGCTGCCATCTTCACGGTCCTCTTCAGCTCCCTGTGTTTGCTGCTCCCCACTGAGGACCCACTGCCTTTCCTGACCCTCGCCTTACCACCCGGCCAAGACGGGGAAACTGAGACTCCAAGAGGGCCGTGGAAGATACTGGCTCTGCTCTATTACCCTGCCCTCTACTATCCCCTGGCTGTCTGTGCCACGGTCAGGCATGGAGCCGCACACCTGCTCGGCAGTGTGCTGTCCTGGGCTCATCTGGGGGTCCAGGTCTGGCAAAGGGCAGAGTGTCCGGTGTCACCCAAGATCTACAAGTACTACTCCCTGTTGGCTTCTCTGCCTCTCCTTCTGGGCCTCGGATTCCTGAGCCTTTGGTACCCGGTGCAGCTGGTGAAAAGCTTCAGTCACGGGGCAGCAGCGGGTTCCAAGGGGCTGCAGAACAACTACTCTGAAGAATATCTGAGGACCCTCCTTTGCCAGAAGAAGCTGAAAAGCAGCTCCCACACATCCAAGCAGGGCTTCCTGTCCCGGGCCTGGATCTACTTCAGACACTACATCTACACTCCACAGCGAGGATTCCGACTCCCCCTGAAGCTGGTGCTTTCAGTCACCCTGACAGGGACGGCCATCTACCAGGTGGCCCTGCTGCTACTGGTGGGCGTGGTACCCACCATCCAGAAGGTGAGGGCAGGGATCACCATGGACGTCTCCTACCTGCTGGCTGGCTTTGGCATCGTGCTCTCAGAGGACAGGCAGGAGGTGGTGGAGCTGGTGAAGCACTACCTGTGGGCTCTGGAAGTTTGCTACATCTCGGCCTTGGTTCTGTCTTGCTTGCTCACCTTCCTCATGCTGACCCGCTCACTGGTGACACACAGGGCCAACCTGCGAGCTCTGCACCGAGGGGGCGCCCTGGACCTGGGCCCCCGGCCCCAGAGCCCTCGCCCCTCCCGCCAGGCCATATTTTGTTGGATGAGCTTCACCGCCTACCAGACTGCTTTTACCTGCCTTGGGCTCCTGGTGCAGCAGATCCTCTTCTTCCTGGGGACCTTGGCCCTTGCCTTCCTGGTGTTCATGCCCGTGCTCCACGGCAGGAACCTTCTGCTCCTCCGATTCCTGAAGTCCTCATGGCCCTTCTGGCTGACCTTGGCCCTGGCTGTGACCCTGCAGAACATGGCAGCCCACTGGGTCTTCCTAGACACTCACCATGGACGTCCAGAGCTGACCAACCGGCGAGCACTCTATGCAGCCACCTTCCTTCTCTTCCCCATCAATGTGCTGGTGGGTGCCATGATGGCCGCCTGGCGAGTGCTCCTCTCTGCCCTCTACAATGCTGTCCACCTTGGCCAGATGGACCTCAGCCTGCTGCCACCTAGAGCCGCCACTTTCGACCCCGGCTACCACACATACTGCAACTTCTTGAAGATGGAGGTCAGCCAGTCACATCCAGCCTTGACAGCCTTCTGTGCCCTGCTCCTGCGAACTCGGAGGCCCCAGCCCCGCACGGTCCCCCGTGATGGCCTCAGTCTGGGGGAGGAAGAGGAGGGGATGCGGTTGCTGCAGACCAAGGACCGGGTGGCCAAGGGAGCGGGGCCCGGGGTAGGCCGAGGCAGGGCCCGCTGGGCTCTGGCATACACGCTGCTGCACAACCCAGCCCTGCAGGCCTTCCGGAAGACAGCCCTATCAGATGCCCGGGCCAACGGTGCCCAGCCCTGA

Related Sequences

bmy_11977T0 SequenceType object (3)

Length: 669 aa      View alignments
>bmy_11977T0
MSTQAAGNQTSXGATDDDDSYGSWYIDEPQGGQELEPEGLVPSCHPSVPPGLYHACLVVLSVLVLLLLAMLVKRRQLWPHCGHGRPGLPSPVDFLAGDRPRTVPAAIFTVLFSSLCLLLPTEDPLPFLTLALPPGQDGETETPRGPWKILALLYYPALYYPLAVCATVRHGAAHLLGSVLSWAHLGVQVWQRAECPVSPKIYKYYSLLASLPLLLGLGFLSLWYPVQLVKSFSHGAAAGSKGLQNNYSEEYLRTLLCQKKLKSSSHTSKQGFLSRAWIYFRHYIYTPQRGFRLPLKLVLSVTLTGTAIYQVALLLLVGVVPTIQKVRAGITMDVSYLLAGFGIVLSEDRQEVVELVKHYLWALEVCYISALVLSCLLTFLMLTRSLVTHRANLRALHRGGALDLGPRPQSPRPSRQAIFCWMSFTAYQTAFTCLGLLVQQILFFLGTLALAFLVFMPVLHGRNLLLLRFLKSSWPFWLTLALAVTLQNMAAHWVFLDTHHGRPELTNRRALYAATFLLFPINVLVGAMMAAWRVLLSALYNAVHLGQMDLSLLPPRAATFDPGYHTYCNFLKMEVSQSHPALTAFCALLLRTRRPQPRTVPRDGLSLGEEEEGMRLLQTKDRVAKGAGPGVGRGRARWALAYTLLHNPALQAFRKTALSDARANGAQP*