Sequence detailsbmy_11998 (Coding sequence)

Part of scaffold_687 (SequenceType object (1))

For more information consult the page for scaffold_687 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PPP1R42ENSTTRG00000017151 (Bottlenosed dolphin)

Gene Details

protein phosphatase 1, regulatory subunit 42

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000016257, Bottlenosed dolphin)

Protein Percentage 77.65%
cDNA percentage 82.87%
Ka/Ks Ratio 0.99834 (Ka = 0.2035, Ks = 0.2039)

PPP1R42 (Minke Whale)

Gene Details

protein phosphatase 1, regulatory subunit 42

External Links

Gene match (Identifier: BACU020542, Minke Whale)

Protein Percentage 79.33%
cDNA percentage 84.36%
Ka/Ks Ratio 0.98278 (Ka = 0.1807, Ks = 0.1839)

Additional orthologs identified in other species via the OPTIC pipeline.

BT.42457 (Cow)   PPP1R42 (Human)   Ppp1r42 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 540 bp    Location:497564..479723   Strand:-
Raw sequence 
>bmy_11998
ATGGTTCGACTGACCTTGGATCTAATTGCCAAAAAGAGCAATCTTAAACCCCGAAAAGAAGAAACCACTTTACAATACCTGAAGAAAATAACTCATATAAATTTTTCAGCCAAAAATATAGATGCAATTGAAGACCTCTCTCTKTGCAAAAATCTTAGTGTTTTATATTTGTATGATAACTGTATTAGTCAAATCACTAACCTGAATTATGCCACAAATYTGACCCACTTATACCTACAAAACAATTGTATTTCATGTATAGAGAACCTCGGGTCATTAAAGAAACTGGAAAAACTTATTATTAGTACTAAATAWATTGTTATACATAAATCCCTCTCTATATTGAATATCAGCAATAATAATATTGATGACATAAGAGACTTAGAAATACTGGAGAATCTTAATCAGCTCATAGCAGTTGACAACGAACTTCTGCATGTGAAGGTAAGTTGCCCAAAAGCTGCTGACATCAAACCCTGCGCCATGGGAGAGAAAGCTCAATGTGCCATACATAAAGTCGCTGACATCCATCCTAACTAA

Related Sequences

bmy_11998T0 SequenceType object (3)

Length: 180 aa      
>bmy_11998T0
MVRLTLDLIAKKSNLKPRKEETTLQYLKKITHINFSAKNIDAIEDLSLCKNLSVLYLYDNCISQITNLNYATNLTHLYLQNNCISCIENLGSLKKLEKLIISTKXIVIHKSLSILNISNNNIDDIRDLEILENLNQLIAVDNELLHVKVSCPKAADIKPCAMGEKAQCAIHKVADIHPN*